EY665891

Overview
NameEY665891
Unique NameEY665891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: MCCA_SOYBN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.327e-57
Identity = 113/143 (79.02%), Postives = 128/143 (89.51%), Query Frame = 3
Query:   69 LQSRLFSVSKSGCKSDDKQQRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASKRIM 497
            +++R FS  KS       + RIEKIL+ANRGEIACRI RTA+RLGI+TVAVYSDADRDSLHV +ADEAIRIGPPPARLSYLNG+SIVDAAIR+GAQAIHPGYGFLSESADFA+LC ++GLTFIGPP SAIRD+GD+SASKRIM
Sbjct:   17 VRARAFSEGKSS-----NRHRIEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSYLNGASIVDAAIRSGAQAIHPGYGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASKRIM 154          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: MCCA_ARATH (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=MCCA PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 5.184e-57
Identity = 118/162 (72.84%), Postives = 135/162 (83.33%), Query Frame = 3
Query:   15 MSLMP-FTLRRKPNDTSFTLQSRLFSVSKSGCKSDDKQQRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASKRIM 497
            MS+M  + LRR     + ++  R  S S S      K+Q IEKIL+ANRGEIACRIMRTAKRLGI+TVAVYSDADRDSLHVKSADEA+RIGPP ARLSYL+G +I++AA RTGAQAIHPGYGFLSES+DFAQLC D+GLTFIGPP SAIRD+GD+SASKRIM
Sbjct:    1 MSMMTVWALRRNVRRKNHSMLVRYISGSAS---MKPKEQCIEKILVANRGEIACRIMRTAKRLGIQTVAVYSDADRDSLHVKSADEAVRIGPPSARLSYLSGVTIMEAAARTGAQAIHPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIM 159          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: MCCA_ORYSJ (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 4.541e-53
Identity = 107/153 (69.93%), Postives = 125/153 (81.70%), Query Frame = 3
Query:   39 RRKPNDTSFTLQSRLFSVSKSGCKSDDKQQRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASKRIM 497
            RR  +  +  L +RL S S S          +EK+L+ANRGEIACR+MRTA+RLGI TVAVYSDADR +LHV++ADEA+R+GPPPAR SYLN S+IVDAA+RTGA+AIHPGYGFLSESADFAQLC   GLTFIGPP SAIRD+GD+SASKRIM
Sbjct:   11 RRSRHGGASLLLARLLSSSSSEAGGGGA---VEKVLVANRGEIACRVMRTARRLGIPTVAVYSDADRGALHVRAADEAVRLGPPPARESYLNASAIVDAALRTGAKAIHPGYGFLSESADFAQLCKAEGLTFIGPPPSAIRDMGDKSASKRIM 160          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: MCCA_DICDI (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=mccA PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.409e-40
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 3
Query:  114 DDKQQRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASKRIM 497
            D K + I KILIANRGEIACR+MRTAK  G++TVAVYS+AD++SLHV  ADE+  IGP  A+ SYL G+ I+D A R+GAQAIHPGYGFLSE++DFA LC   G+ FIGPP  AI+ +G +SASK IM
Sbjct:   24 DLKIKPITKILIANRGEIACRVMRTAKSKGVKTVAVYSEADKNSLHVSMADESYLIGPAAAKESYLCGNKIIDVAKRSGAQAIHPGYGFLSENSDFADLCEREGIIFIGPPSDAIKAMGSKSASKDIM 151          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: MCCA_HUMAN (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Homo sapiens GN=MCCC1 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.086e-38
Identity = 78/124 (62.90%), Postives = 98/124 (79.03%), Query Frame = 3
Query:  126 QRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASKRIM 497
            + I K+LIANRGEIACR+MRTAK+LG++TVAVYS+ADR+S+HV  ADEA  IGP P++ SYL+   I+  A  + AQAIHPG GFLSE+ +FA+LC   G+ FIGPP SAIRD+G +S SK IM
Sbjct:   47 RNITKVLIANRGEIACRVMRTAKKLGVQTVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLSMEKIIQVAKTSAAQAIHPGCGFLSENMEFAELCKQEGIIFIGPPPSAIRDMGIKSTSKSIM 170          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: MCCA_MOUSE (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Mus musculus GN=Mccc1 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.159e-38
Identity = 79/151 (52.32%), Postives = 108/151 (71.52%), Query Frame = 3
Query:   45 KPNDTSFTLQSRLFSVSKSGCKSDDKQQRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASKRIM 497
            +P + ++ L++  +  +  G         I K+LIANRGEIACR++RTAK++G+++VAVYS+ADR+S+HV  ADEA  IGP P++ SYL    I+  A  + AQAIHPGYGFLSE+ +FA+LC   G+ FIGPP SAIRD+G +S SK IM
Sbjct:   24 QPREWAWKLRTMKYGTTPGGS--------ITKVLIANRGEIACRVIRTAKKMGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPGYGFLSENMEFAELCKQEGIIFIGPPSSAIRDMGIKSTSKSIM 166          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: MCCA_RAT (Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Mccc1 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.958e-37
Identity = 73/122 (59.84%), Postives = 96/122 (78.69%), Query Frame = 3
Query:  132 IEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASKRIM 497
            I K+LIANRGEIACR++RTA+++G+++VAVYS+ADR+S+HV  ADEA  IGP P++ SYL    I+  A  + AQAIHPGYGFLSE+ +FA+ C   G+ FIGPP +AIRD+G +S SK IM
Sbjct:   45 ITKVLIANRGEIACRVIRTARKMGVQSVAVYSEADRNSMHVDMADEAYSIGPAPSQQSYLAMEKIIQVAKSSAAQAIHPGYGFLSENMEFAEFCKQEGIIFIGPPSTAIRDMGIKSTSKSIM 166          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: PCCA_RAT (Propionyl-CoA carboxylase alpha chain, mitochondrial (Fragment) OS=Rattus norvegicus GN=Pcca PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.016e-36
Identity = 77/160 (48.12%), Postives = 112/160 (70.00%), Query Frame = 3
Query:    9 RTMSLMPFTLRRKPNDTSFTLQSRLFSVSKSGCKSDDKQQRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASK 488
            R+   + +TL+R P    ++ Q  + S S S  + + K++  +KILIANRGEIACR+++T +++GIRTVA++SD D  S+HVK ADEA+ +GP P   SYLN  +I++A  +TGAQA+HPGYGFLSE+ +FA+      +TFIGP   AI+ +GD+  SK
Sbjct:    1 RSSQQLLWTLKRAP---VYSQQCLVVSRSLSSVEYEPKEKTFDKILIANRGEIACRVIKTCRKMGIRTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTGAQAVHPGYGFLSENKEFAKCLAAEDVTFIGPDTHAIQAMGDKIESK 157          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: PCCA_MOUSE (Propionyl-CoA carboxylase alpha chain, mitochondrial OS=Mus musculus GN=Pcca PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 7.283e-35
Identity = 74/152 (48.68%), Postives = 106/152 (69.74%), Query Frame = 3
Query:   33 TLRRKPNDTSFTLQSRLFSVSKSGCKSDDKQQRIEKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASK 488
            TL+  P    ++ Q  + S S S  + + K++  +KILIANRGEIACR+++T K++GI+TVA++SD D  S+HVK ADEA+ +GP P   SYLN  +I++A  +T AQA+HPGYGFLSE+ +FA+      +TFIGP   AI+ +GD+  SK
Sbjct:   29 TLKHAP---VYSYQCLVVSRSLSSVEYEPKEKTFDKILIANRGEIACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYGFLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESK 177          
BLAST of EY665891 vs. ExPASy Swiss-Prot
Match: BCCA_MYCTU (Acetyl-/propionyl-coenzyme A carboxylase alpha chain OS=Mycobacterium tuberculosis GN=accA1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.513e-35
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = 3
Query:  135 EKILIANRGEIACRIMRTAKRLGIRTVAVYSDADRDSLHVKSADEAIRIGPPPARLSYLNGSSIVDAAIRTGAQAIHPGYGFLSESADFAQLCGDNGLTFIGPPVSAIRDLGDQSASK 488
            + +L+ANRGEIA R++RT +RLGIR+VAVYSD D D+ HV  AD A+R+GP PAR SYL+   ++DAA RTGAQAIHPGYGFL+E+ADFA  C    + F+GPP  AI  +GD+ A+K
Sbjct:    3 DTVLVANRGEIAVRVIRTLRRLGIRSVAVYSDPDVDARHVLEADAAVRLGPAPARESYLDIGKVLDAAARTGAQAIHPGYGFLAENADFAAACERARVVFLGPPARAIEVMGDKIAAK 120          
The following BLAST results are available for this feature:
BLAST of EY665891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
MCCA_SOYBN2.327e-5779.02Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ARATH5.184e-5772.84Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_ORYSJ4.541e-5369.93Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_DICDI4.409e-4064.84Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_HUMAN1.086e-3862.90Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_MOUSE3.159e-3852.32Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
MCCA_RAT5.958e-3759.84Methylcrotonoyl-CoA carboxylase subunit alpha, mit... [more]
PCCA_RAT1.016e-3648.13Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
PCCA_MOUSE7.283e-3548.68Propionyl-CoA carboxylase alpha chain, mitochondri... [more]
BCCA_MYCTU9.513e-3560.17Acetyl-/propionyl-coenzyme A carboxylase alpha cha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665891 ID=EY665891; Name=EY665891; organism=Citrus sinensis; type=EST; length=890bp
CCCGCGTCCGGACAATGTCGTTAATGCCCTTTACTCTCCGTCGAAAACCA
AACGACACGTCGTTTACTCTTCAATCACGACTATTCAGCGTATCGAAATC
TGGTTGCAAATCCGATGATAAGCAACAGCGGATAGAGAAGATTTTAATAG
CCAACAGAGGAGAGATTGCTTGCAGAATTATGAGAACCGCTAAGCGATTG
GGGATTCGAACCGTAGCCGTATACAGCGACGCCGACAGAGACTCGCTTCA
CGTGAAATCCGCTGACGAAGCTATTCGCATCGGCCCACCTCCGGCTCGGT
TGAGTTATCTTAATGGCTCGTCCATTGTTGACGCCGCGATTCGAACTGGT
GCTCAGGCTATCCACCCTGGTTATGGTTTCTTATCTGAAAGTGCGGATTT
TGCTCAACTTTGTGGAGATAATGGTCTTACCTTTATTGGCCCTCCAGTGT
CTGCTATCCGGGACCTGGGCGACCAGAGTGCATCAAAGAGAATAATGGGT
GCCGCAGGGGTTCCACTTGTTCCTGGGCACCCTGGCCATGGAACAACATA
TTGATCTAATGAAATCAAAAGCACCTAACATTGGGGATCCCATATTTAAT
AAAGCCAAATTCCTGCGTGGGGGGAGGAAAAGGGGAGGACATTTGCGCAA
CATTCCAATGACTTTTGTTGACCTCCTTTCTTGGGACCCACCACCGCGGG
CTTCCGGCTTTTCTTTTGGGACACACCACCATTCTTGTTATACAAACTTT
TTTTAACCCCGACCCCAGCCCCGCCATAAGTCCCCGACTCTCTGGCGGAC
CATTTCTCGCAGGGCGCGTGTGATCTCCGGCTCCCAGAACAACTCCCCTG
CTCACTAAAAAGACTCTACGCCAACTCAACATACTGCAAC
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