CK937621

Overview
NameCK937621
Unique NameCK937621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10937 contig Csv1_Contig10937:1..508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937621 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.257e-34
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1 
Query:  193 ASSPRTVEEIYKDFCARRAGVVRALTNDVDEFYGLCDPDKENLCLYGHPNESWXXXXXXXXXXXXXXXXXXGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGAR 513
            A +PRTVEE+++DF  RRAG+++ALT DV EF+ LCDP+KENLCLYGHPNE W                  GINFARDGM  KDWLSLVAVH+D+WLL+VAF+ GAR
Sbjct:    6 AYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGAR 112
The following BLAST results are available for this feature:
BLAST of CK937621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH2.257e-3461.68PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004778_C08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937621 ID=CK937621; Name=CK937621; organism=Citrus sinensis; type=EST; length=520bp
GGGGATGTACAATANNNGTGCATCTTTCTTCGATACCATCTCGTCTCCTC
GACTCGATCTCCATGGTCTCACCGTACCCTTACTCTAATTCAAATTCCTC
CAGTTCGGCCAATTCGCTCCTCTAATTAAATCCAATTGAATAGAATCTCA
CTTACTAATTAGATCTCCAATATTTGCTTTGCTATGGAAATGGCCTCCAG
CCCCCGCACCGTGGAGGAGATCTACAAAGATTTCTGCGCTCGTAGAGCCG
GCGTTGTTCGCGCTTTAACTAACGATGTCGATGAATTTTACGGACTCTGC
GATCCAGATAAGGAGAATCTGTGCTTGTACGGCCATCCTAATGAGTCGTG
GGAAGAGACGTTGCCGGCAGAGGAAGTTCCGCCGGAGCTTCCTGAGCCGG
CACTTGGAATTAATTTTGCGAGAGATGGGATGAACAGGAAGGACTGGCTG
TCTTTGGTTGCAGTGCACACTGATTCATGGTTGCTTTCAGTGGCTTTTTA
TCTTGGAGCTCGTCTTAACC
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