CK937620

Overview
NameCK937620
Unique NameCK937620
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937620_ssr354 microsatellite CK937620_ssr354:354..365. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937620_ssr373 microsatellite CK937620_ssr373:373..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12293 contig Csv1_Contig12293:9..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.157e-49
Identity = 102/188 (54.26%), Postives = 120/188 (63.83%), Query Frame = 2
Query:   83 AITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            A+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS WY+SV+S+LA SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKKL IM TI
Sbjct:    2 AVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTI 189          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 5.901e-45
Identity = 97/188 (51.60%), Postives = 113/188 (60.11%), Query Frame = 2
Query:   83 AITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            A+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+ WYD+V++ LA  FPGKAVGV                                                             VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKKLQIM+TI
Sbjct:    2 AVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTI 189          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 55/76 (72.37%), Postives = 66/76 (86.84%), Query Frame = 2
Query:   83 AITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGVR 310
            A+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS WYDSV+S LA SFPGKA GVR
Sbjct:    2 AVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          

HSP 2 Score: 98.9821 bits (245), Expect = 2.258e-20
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKKL IM+TI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTI 193          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.760e-21
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 2
Query:   83 AITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPSFPGKAVGV 307
            A+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+ WYD+V++ ++  FPG+A GV
Sbjct:    2 AVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          

HSP 2 Score: 97.8265 bits (242), Expect = 5.030e-20
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKKLQIM+TI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTI 183          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.949e-20
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKKL IM TI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTI 196          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKKLQI+ TI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTI 196          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTI 191          

HSP 2 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 2
Query:   83 AITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRLAPS 283
            AIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N + WYD +S+ L  S
Sbjct:    2 AITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS 68          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKKLQIM+TI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTI 194          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKKLQIM+TI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTI 191          

HSP 2 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 2
Query:   83 AITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASSWYDSVSSRL 274
            A+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N S WY+ V + L
Sbjct:    2 AVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALL 65          
BLAST of CK937620 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  491 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKLQIMITI 646
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKKL IM+TI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTI 196          
The following BLAST results are available for this feature:
BLAST of CK937620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF1B2_ARATH5.157e-4954.26Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ5.901e-4551.60Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B1_ARATH3.596e-2672.37Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT7.760e-2158.67Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]
EF1D2_ARATH2.949e-2086.54Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH3.851e-2084.62Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D2_ORYSJ1.121e-1988.46Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D1_ORYSJ1.121e-1988.46Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR4.258e-1986.54Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU8.031e-1886.54Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_C07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937620 ID=CK937620; Name=CK937620; organism=Citrus sinensis; type=EST; length=647bp
GGGGGCAAAAGTAGGAAGCGATTATCCTGTGTTGAAGTTGTGCGTCTCTT
CTTGCCTCTGCCTTGATTTGAAGACCAAAACGGCCATCACTTTTTCGGAT
CTCCACACAGAGTCAGGCCTTAAGTCTCTCGATCAGTATCTTTCTGGGAA
ATCTTATATCTCCGGTAATCAACTGACAAAAGATGACATCAAGGTCTACG
CTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAACGCCAGCAGCTGG
TACGACAGCGTTTCTTCACGTCTCGCCCCAAGCTTCCCTGGCAAAGCCGT
TGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGACGCCGCCGCAGCCA
AGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTTGGATCTCTTTGGA
GATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGAGGGAGGCTGCTAA
AAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCATCGGTACTTTTGG
ATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAAGCTAGAAGAGGCA
GTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAGCATCAAAATTGGT
CCCAGTCGGTTATGGGATTAAAAAGCTGCAAATCATGATTACAATCG
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