CK937618

Overview
NameCK937618
Unique NameCK937618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.909e-44
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV+VD KVRTDKTYPAGFMD  S
Sbjct:    1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVS 91          

HSP 2 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSIPKTNE+FRLLYDTKGRF LH+I  +E KFKLCKVRSVQFGQKGIPY+NTYDGR
Sbjct:   88 DVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMD
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMD 88          

HSP 2 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 50/58 (86.21%), Postives = 56/58 (96.55%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SIPKT EN+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY+NTYDGR
Sbjct:   88 DVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFMD
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMD 88          

HSP 2 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 53/58 (91.38%), Postives = 57/58 (98.28%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SIPKTNEN+RLLYDTKGRFRLH IRDE+AKFKLCKVRSVQFGQKGIPY+NTYDGR
Sbjct:   88 DVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMD  S
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91          

HSP 2 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGR
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMD  S
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91          

HSP 2 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGR
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.616e-43
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFMD  S
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91          

HSP 2 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAKFKLCKVRS+QFGQKGIPY+NTYDGR
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.140e-43
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR V+VD KVRTDKTYPAGFMD  S
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVS 91          

HSP 2 Score: 119.783 bits (299), Expect = 1.374e-26
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPY+NTYDGR
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKV 341
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++ILMQRH+LVD K+
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKI 76          

HSP 2 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSIPKTNENFRLLYDTKGRFRLHSIRDEE+KFKLCKVRSVQFGQKGIPYINTYDGR
Sbjct:   84 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGR 141          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34
Identity = 70/88 (79.55%), Postives = 74/88 (84.09%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 377
            MARG KKHLKRL AP HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV  ILMQR V VD KVRTD  YPAGFMD
Sbjct:    1 MARGPKKHLKRLAAPNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMD 88          

HSP 2 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DV+SI KT ENFRLL+D KGRF L  I  EEAKFKL +V  V+ G +GIPY++T DGR
Sbjct:   88 DVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGR 145          
BLAST of CK937618 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 3
Query:  114 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 386
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VD KVRTD TYPAGFMD  S
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 91          

HSP 2 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  511 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR 684
            DVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ V  G K +P++ T+DGR
Sbjct:   88 DVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKVKRVSTGPKNVPFLVTHDGR 145          
The following BLAST results are available for this feature:
BLAST of CK937618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS4_GOSHI1.909e-4494.5140S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_ORYSJ2.493e-4496.5940S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_MAIZE2.493e-4496.5940S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS43_ARATH1.616e-4391.2140S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH1.616e-4391.2140S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH1.616e-4391.2140S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU6.140e-4390.1140S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_PRUAR1.913e-3693.4240S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_DICDI8.887e-3479.5540S ribosomal protein S4 OS=Dictyostelium discoide... [more]
RS4_SPOFR1.161e-3374.7340S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_C05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937618 ID=CK937618; Name=CK937618; organism=Citrus sinensis; type=EST; length=686bp
GGGGGCGGGAGTGGAGCTAGCATCGCTTGTNNNTGCATTTTTCACTTCGT
TTTTGTTTTGCAGGACTGTGACACGCCGTTGGCGAATCCAAGCTCAGGCT
CACGAACACAAAAATGGCGAGAGGTTTGAAGAAACATTTGAAGAGGCTTA
ATGCCCCAAAGCACTGGATGCTTGACAAACTTGGTGGAGCATTTGCTCCC
AAGCCTTCATCTGGGCCACACAAATCAAGGGAGTGTTTGCCCTTAATTCT
TATCTTACGCAACCGCTTGAAGTATGCTCTTACATACCGAGAAGTCATTG
CAATTTTGATGCAACGACATGTGTTGGTTGATGCTAAGGTTCGCACAGAT
AAGACTTACCCTGCTGGGTTCATGGATGCGGGCTCAAAATCATACTTGTG
TTCATGATGATTCCTCCATTTCTGATATCATATTCCAAATTTAAGCCTCC
TTGATTTACTCTTTCTTTAAGAAGTTTTTTAAGATTTTTCACTTGTCCTT
TTGACTATCAGATGTTGTGTCAATTCCAAAGACGAATGAGAACTTCCGTC
TCCTTTACGACACCAAGGGCCGGTTCCGCCTTCATTCAATCAGGGATGAG
GAGGCTAAGTTCAAGCTCTGCAAGGTTCGATCAGTGCAATTTGGGCAGAA
GGGAATCCCTTACATCAACACTTATGATGGGAGGAC
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