EY665887

Overview
NameEY665887
Unique NameEY665887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665887_ssr50 microsatellite EY665887_ssr50:50..59. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.837e-66
Identity = 120/141 (85.11%), Postives = 128/141 (90.78%), Query Frame = 1
Query:   70 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 492
            M T K VKDVSPH+FVKAYA+HLKRSGKIELPTW DIVKTG LKELAPYDPDWYYIRAASMARK+Y RGGLGVG+FRRIYGG KRNGS PPHF KSSG +ARHIL QL+  NI+ELD+KGGRRITSSGQRDLDQVAGRIAV
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAV 141          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.408e-65
Identity = 120/140 (85.71%), Postives = 126/140 (90.00%), Query Frame = 1
Query:   70 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 489
            M T K VKDVSPHEFVKAYAAHLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARK+Y RGGLGVG+FRRIYGG KRNGS PPHF KSSG VARHIL QLQ  NI++LD+KGGR+ITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIA 140          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.192e-64
Identity = 118/140 (84.29%), Postives = 126/140 (90.00%), Query Frame = 1
Query:   70 METAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 489
            M T K VKDVSPH+FVKAYA+HLKRSGKIELP W DIVKTG LKELAPYDPDWYYIRAASMARKIY RGGLGVG+FRRIYGG KRNGS PPHF KSSG +ARHIL QL+  +I+ELD+KGGRRITSSGQRDLDQVAGRIA
Sbjct:    1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRIA 140          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.491e-54
Identity = 100/139 (71.94%), Postives = 117/139 (84.17%), Query Frame = 1
Query:   76 TAKNVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAV 492
            TA+ VKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKT   KEL PYDPDWYY RAAS+ARKIY R G+GVG F++IYGG +RNGS PPHF KSSG+++R+IL QLQ   II++D KGGR ITS G+RDLDQVAGR+ V
Sbjct:    5 TARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.408e-43
Identity = 76/135 (56.30%), Postives = 104/135 (77.04%), Query Frame = 1
Query:   85 NVKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 489
            +VKDVS HEF +A+AA LK+SGK+++P W D VKTG  KEL+PY+PDWY+IRAAS+ R +Y R   G+GSF +IYGG +R G+ P HF K++GS++R +L  L+   I+E D  GGRR+TS G+RDLD++A +IA
Sbjct:    4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLTSQGRRDLDRIAAQIA 138          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19_BRABE (40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.037e-41
Identity = 78/134 (58.21%), Postives = 102/134 (76.12%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 489
            VKDV+  EFVKA+AA LK+SGK++LP W D+VKT   KELAPYDPDW+Y+RAAS AR +Y RGG+GVG+  +IYGG KR G+ P  F   S  V+R +L  L+   ++E D+ GGRR+TS GQRDLD++AG++A
Sbjct:    7 VKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLTSQGQRDLDRIAGQVA 140          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.561e-40
Identity = 76/137 (55.47%), Postives = 103/137 (75.18%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIAVVA 498
            VKDV+  EFVKA AA  K+SGK++ P W D VK G  KELAP+D DWYYIR AS+AR +Y RGG+GVG+  +IYGG +RNG+ P H+S+ S +VAR +L  L+   ++E D  GGRR+TS GQRD+D++AG++ V++
Sbjct:    6 VKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLTSIGQRDMDRIAGQVVVLS 142          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19_PONAB (40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.264e-39
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 489
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.264e-39
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 489
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
BLAST of EY665887 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.264e-39
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 1
Query:   88 VKDVSPHEFVKAYAAHLKRSGKIELPTWNDIVKTGTLKELAPYDPDWYYIRAASMARKIYFRGGLGVGSFRRIYGGGKRNGSCPPHFSKSSGSVARHILHQLQNTNIIELDSKGGRRITSSGQRDLDQVAGRIA 489
            VKDV+  EFV+A AA LK+SGK+++P W D VK    KELAPYD +W+Y RAAS AR +Y RGG GVGS  +IYGG +RNG  P HFS+ S SVAR +L  L+   ++E D  GGR++T  GQRDLD++AG++A
Sbjct:    6 VKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVA 139          
The following BLAST results are available for this feature:
BLAST of EY665887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RS191_ARATH2.837e-6685.1140S ribosomal protein S19-1 OS=Arabidopsis thalian... [more]
RS193_ARATH1.408e-6585.7140S ribosomal protein S19-3 OS=Arabidopsis thalian... [more]
RS192_ARATH1.192e-6484.2940S ribosomal protein S19-2 OS=Arabidopsis thalian... [more]
RS19_ORYSJ2.491e-5471.9440S ribosomal protein S19 OS=Oryza sativa subsp. j... [more]
RS19_MYAAR4.408e-4356.3040S ribosomal protein S19 OS=Mya arenaria GN=RPS19... [more]
RS19_BRABE7.037e-4158.2140S ribosomal protein S19 OS=Branchiostoma belcher... [more]
RS19_MYXGL4.561e-4055.4740S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19_PONAB2.264e-3956.7240S ribosomal protein S19 OS=Pongo abelii GN=RPS19... [more]
RS19_HUMAN2.264e-3956.7240S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN2.264e-3956.7240S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665887 ID=EY665887; Name=EY665887; organism=Citrus sinensis; type=EST; length=772bp
ACAGTCACATAGCACATGCCGCAGCTGCTCCGCCGCTGAAGCACAGACTG
AGAGAGAGACAGAGAGAGAATGGAGACTGCAAAAAATGTGAAGGACGTCT
CTCCCCACGAGTTCGTCAAGGCCTACGCCGCCCATCTCAAACGCTCCGGC
AAGATTGAGCTTCCTACTTGGAACGACATCGTCAAGACTGGAACGTTGAA
GGAGCTAGCCCCTTATGACCCCGATTGGTACTATATCAGGGCTGCTTCAA
TGGCGAGGAAGATCTACTTTAGGGGTGGTCTTGGTGTTGGTTCCTTCCGT
AGAATCTATGGAGGGGGGAAGAGGAACGGTAGCTGCCCACCTCATTTCAG
CAAGAGCAGTGGCTCTGTTGCTCGTCACATACTTCACCAATTGCAGAACA
CGAACATCATCGAGCTTGACTCCAAGGGTGGAAGGAGAATCACATCCAGT
GGGCAGCGGGATCTTGATCAAGTTGCTGGACGGATTGCAGTTGTTGCCCC
CTTGAGGGATTAGCTCAAGCTTTCAAAAAGGATTGATGTTATTGAGCTAG
TTGTTTGAATGGGAGTAGGAGAAAAAAAGCATCCGCAAGTTTGATTTTCA
GTTCTTCTGGGTAATAACCTAAGAATGAATGGTAAAGGAAATTTCTTTTC
TCCATTTAAAAAAAAAAAAAAAAAAAAAAGGGGGGCCCGCCTCTAAAGAA
TCACACTTTACTAACGCGTGGTATGAGACCCCACAGGATCTCAACCACCT
TCCCACTACTATAAATCCACCA
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