CK937606

Overview
NameCK937606
Unique NameCK937606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length252
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CITSI (DNA-directed RNA polymerase subunit beta' OS=Citrus sinensis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.991e-40
Identity = 76/83 (91.57%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDS + R QMG  KLGCPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSRIRRYQMGYIKLGCPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLTU (DNA-directed RNA polymerase subunit beta' OS=Solanum tuberosum GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLLC (DNA-directed RNA polymerase subunit beta' OS=Solanum lycopersicum GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLBU (DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NICTO (DNA-directed RNA polymerase subunit beta' OS=Nicotiana tomentosiformis GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_NICSY (DNA-directed RNA polymerase subunit beta' OS=Nicotiana sylvestris GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CHLSC (DNA-directed RNA polymerase subunit beta' OS=Chloranthus spicatus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CARPA (DNA-directed RNA polymerase subunit beta' OS=Carica papaya GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_CALFG (DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
[Close]
BLAST of CK937606 vs. ExPASy Swiss-Prot
Match: RPOC1_ATRBE (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    4 GLFCERIFGPIKSGICACGNYRIIGDEKEDPQFCEQCGVEFVDSXMLRCQMGXXKLGCPVTHVWDLKRLPSYIANLLDKPLKE 252
            GLFCERIFGPIKSGICACGNYR+IGDEKEDP+FCEQCGVEFVDS + R QMG  KL CPVTHVW LKRLPSYIANLLDKPLKE
Sbjct:   54 GLFCERIFGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKE 136
The following BLAST results are available for this feature:
BLAST of CK937606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RPOC1_CITSI1.991e-4091.57DNA-directed RNA polymerase subunit beta' OS=Citru... [more]
RPOC1_SOLTU3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Solan... [more]
RPOC1_SOLLC3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Solan... [more]
RPOC1_SOLBU3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Solan... [more]
RPOC1_NICTO3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Nicot... [more]
RPOC1_NICSY3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Nicot... [more]
RPOC1_CHLSC3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Chlor... [more]
RPOC1_CARPA3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Caric... [more]
RPOC1_CALFG3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Calyc... [more]
RPOC1_ATRBE3.756e-3987.95DNA-directed RNA polymerase subunit beta' OS=Atrop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937606 ID=CK937606; Name=CK937606; organism=Citrus sinensis; type=EST; length=252bp
GGGGGATTATTTTGTGAAAGAATTTTTGGGCCNATTAAAAGTGGAATTTG
TGCTTGTGGAAATTATCGAATAATCGGAGATGAAAAAGAAGACCCGCAAT
TTTGTGAACAATGTGGGGTTGAGTTTGTTGATTCNNNGATGCTAAGATGT
CAAATGGGANANNNAAAACTGGGATGCCCAGTAACCCACGTGTGGGATTT
GAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAG
AA
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