CK937602

Overview
NameCK937602
Unique NameCK937602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig132 contig Csv1_Contig132:306..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937602 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.752e-62
Identity = 132/227 (58.15%), Postives = 154/227 (67.84%), Query Frame = 1
Query:   13 LNPYGRFXTQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP--PVPQLSTCEEQPG-NREGEAQASSIDAMVTGAGEGLPAP---VGDRIIEEVQEDLPASMNPNPVVAG-TSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMD 672
            L P GRF T TKICLSISN+HPEHWQPSWSVRTALVALIAFMPT+PNGALGS+DY K+ERR LAIKSRE  PK+G+PERQK+IDEIH+Y+LSKA   P P    C + P    E  +Q    +A+       +      V D+IIEE  E +  + +  P  A   + EV   AS    Q       QKP DDRLFTWAAVGLTIAI+VLLLKKF+KSNG+ T FMD
Sbjct:   80 LTPNGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTLAIKSRETPPKYGSPERQKIIDEIHQYILSKATVVPKPLPLECSQAPSIVSEAHSQVEPQEAITVVEERSIATTDTIVDDQIIEETAEAVNTAASVVPAAAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSNGYSTGFMD 306          
BLAST of CK937602 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 69/194 (35.57%), Postives = 94/194 (48.45%), Query Frame = 1
Query:    4 IYALNPYGRFXTQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE-AAPKFGTPERQKLIDEIHEYMLSKAPPVPQLSTCEEQPGNREGEAQASSIDAMVTGAGEGLPAPVGDRI--IEEVQEDLPASMNPNPVVAGTSREVPANASGVQ-LQPKPETRVQKPADDR 573
            I  L   GRF    KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++      G+  +  L+            P+   S   +     +  A+  S  A V  +G+ +     ++   + + Q+DLP +            + P+ A   Q  QP P+     P   R
Sbjct:   75 IILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLL------------PLKSGSGSSQADQEAKELARQISFKAEVNSSGKTIAESDLNQCFSLNDSQDDLPTTFQGATASTSYGAQNPSGAPLPQPTQPAPKNTSMSPRQRR 256          
BLAST of CK937602 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.403e-21
Identity = 48/72 (66.67%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    4 IYALNPYGRFXTQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 219
            I  L   GRF    KICLSIS HHPE WQPSWS+RTAL+A+I FMPT   GA+GSLDY  EERRALA KS++
Sbjct:   75 IILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQD 146          
BLAST of CK937602 vs. ExPASy Swiss-Prot
Match: UB2JL_DICDI (Ubiquitin-conjugating enzyme E2 J2-like OS=Dictyostelium discoideum GN=DDB_G0294380 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    4 IYALNPYGRFXTQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 219
            I    P GRF TQ ++CLSIS++HPE W PSWS  + L+ L++FM  N   A GS+    +E+R LA KS +
Sbjct:   81 ILMTTPSGRFETQKRLCLSISDYHPESWSPSWSTSSILLGLLSFMSDNEVTA-GSIVTTNDEKRILATKSMD 151          
BLAST of CK937602 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    4 IYALNPYGRFXTQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSRE 219
            I  L P GRF   T++CLS+S++HP+ W PSWSV T L  L++FM T+   ++G+++     +R  A KS+E
Sbjct:   71 IRMLTPNGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTD-ESSIGTMESTDSTKRKYAAKSKE 141          
The following BLAST results are available for this feature:
BLAST of CK937602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBC32_ARATH5.752e-6258.15Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UB2J1_MOUSE4.926e-2135.57Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN8.403e-2166.67Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UB2JL_DICDI2.709e-1147.22Ubiquitin-conjugating enzyme E2 J2-like OS=Dictyos... [more]
UBC6_ASHGO3.539e-1143.06Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004778_F05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937602 ID=CK937602; Name=CK937602; organism=Citrus sinensis; type=EST; length=676bp
GGGATTTATGCTCTTAACCCTTATGGGCGTTTTNAAACTCAGACCAAAAT
ATGCTTAAGCATTTCGAATCATCATCCGGAGCACTGGCAACCATCTTGGA
GTGTGAGGACTGCTCTTGTAGCACTAATTGCTTTCATGCCCACCAATCCA
AATGGTGCTTTGGGCTCACTAGATTATAAGAAGGAAGAGAGGCGTGCTCT
GGCCATCAAATCTCGTGAAGCTGCCCCAAAATTTGGGACTCCTGAACGTC
AAAAACTCATTGATGAGATCCATGAATATATGTTAAGCAAGGCACCCCCT
GTCCCTCAGCTCAGCACCTGTGAAGAACAGCCTGGCAACAGGGAGGGTGA
AGCACAGGCAAGTTCCATAGACGCCATGGTTACGGGTGCCGGGGAAGGGC
TCCCAGCCCCAGTAGGTGATAGGATTATTGAAGAAGTTCAGGAGGATCTT
CCTGCCAGCATGAATCCCAACCCCGTAGTGGCTGGAACATCAAGAGAGGT
TCCTGCCAACGCCTCTGGAGTCCAGCTTCAGCCAAAACCGGAGACCAGGG
TTCAAAAACCTGCTGATGATCGACTGTTCACATGGGCTGCTGTTGGACTT
ACTATTGCAATTTTGGTTCTTTTACTGAAGAAATTCATGAAATCTAATGG
TCATGGTACTGTTTTCATGGATGGTT
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