CK937601

Overview
NameCK937601
Unique NameCK937601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length134
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8503 contig Csv1_Contig8503:119..252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.683e-16
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GHSNVWNSHPK YGPGSR CRVCGN H +IR+YGL CCRQ
Sbjct:    2 GHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQ 41          
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.311e-15
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GHSNVWNSHPK YG GSR CRVCGN H +IR+YGL+CCRQ
Sbjct:    2 GHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQ 41          
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.958e-11
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GH N+W SHP+ YGPGSR CRVC N H +IR+YGL  CR+
Sbjct:    2 GHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRR 41          
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.698e-11
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GH+N+W SHP+ YG GSR+CR C N H +IR+YGL  CRQ
Sbjct:    2 GHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQ 41          
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.698e-11
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GH+N+W SHP+ YG GSR+CR C N H +IR+YGL  CRQ
Sbjct:    2 GHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQ 41          
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.442e-11
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GH N+W SHP+ YG GSR+CR C N H +IR+YGL  CRQ
Sbjct:    2 GHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQ 41          
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.719e-11
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GH N+W SHP+ YG GSR+C++CGN H +IR+Y +  CRQ
Sbjct:    2 GHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQ 41          
BLAST of CK937601 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.719e-11
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:    2 GHSNVWNSHPKTYGPGSRACRVCGNPHAIIREYGLVCCRQ 121
            GH+N+W SHP+ YG GSR+CR C N H +IR+YGL  CRQ
Sbjct:    2 GHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQ 41          
The following BLAST results are available for this feature:
BLAST of CK937601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RS29_ARATH7.683e-1682.5040S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_WHEAT1.311e-1580.0040S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_IXOSC1.958e-1165.0040S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_SPOFR5.698e-1162.5040S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_PLUXY5.698e-1162.5040S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_SCALT7.442e-1162.5040S ribosomal protein S29 OS=Scarabaeus laticollis... [more]
RS29_GRIJA9.719e-1157.5040S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29_BOMMO9.719e-1162.5040S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004778_F04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937601 ID=CK937601; Name=CK937601; organism=Citrus sinensis; type=EST; length=134bp
GGGTCACTCAAACGTATGGAATTCGCATCCCAAGACCTACGGCCCTGGAT
CTCGTGCTTGCCGCGTTTGCGGGAACCCTCATGCGATTATCAGAGAGTAC
GGCCTCGTGTGCTGCAGGCAGAGCTCCGCAGCAA
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