EY665879

Overview
NameEY665879
Unique NameEY665879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665879_ssr22 microsatellite EY665879_ssr22:22..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.321e-78
Identity = 136/146 (93.15%), Postives = 143/146 (97.95%), Query Frame = 2 
Query:   65 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 146

HSP 2 Score: 38.5058 bits (88), Expect = 1.321e-78
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 3 
Query:  489 LSTFPSFVVRVDSQKPIEFSLTSPF 563
            L   PSF+VRV+SQK ++FSLTSPF
Sbjct:  142 LVNIPSFMVRVESQKHVDFSLTSPF 166
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 4.560e-76
Identity = 132/146 (90.41%), Postives = 142/146 (97.26%), Query Frame = 2 
Query:   65 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            MVHV +YRNYGKTFK PRRPYEKERLD+EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+QLVNIP
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIP 146

HSP 2 Score: 38.1206 bits (87), Expect = 4.560e-76
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 3 
Query:  489 LSTFPSFVVRVDSQKPIEFSLTSPF 563
            L   PSF+VR+DSQK I+F+LTSPF
Sbjct:  142 LVNIPSFMVRLDSQKHIDFALTSPF 166
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.662e-57
Identity = 101/139 (72.66%), Postives = 121/139 (87.05%), Query Frame = 2 
Query:   86 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            R+Y KT K PRRP+E  RLD+EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+P
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVP 142

HSP 2 Score: 38.5058 bits (88), Expect = 1.662e-57
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 3 
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSFVVR+DSQK I+F+LTSPF
Sbjct:  142 PSFVVRLDSQKHIDFALTSPF 162
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.009e-56
Identity = 99/138 (71.74%), Postives = 124/138 (89.86%), Query Frame = 2 
Query:   89 NYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            NY KT   PRRP+EKER+DAEL++VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+P
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVP 141

HSP 2 Score: 28.1054 bits (61), Expect = 4.009e-56
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 3 
Query:  489 LSTFPSFVVRVDSQKPIEFSLTSP 560
            L   PSF+VRV+SQK +  + TSP
Sbjct:  137 LVNVPSFLVRVESQKHLGLASTSP 160
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.967e-55
Identity = 97/137 (70.80%), Postives = 119/137 (86.86%), Query Frame = 2 
Query:   92 YGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            + KT+  PRRPYEK RLD EL+++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIP
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 146

HSP 2 Score: 37.3502 bits (85), Expect = 1.967e-55
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSFVVR+DSQK I+FSL SPF
Sbjct:  146 PSFVVRLDSQKHIDFSLKSPF 166
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 199.519 bits (506), Expect = 1.259e-54
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 2 
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145

HSP 2 Score: 35.8094 bits (81), Expect = 1.259e-54
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSF+VR+DSQK I+FSL SP+
Sbjct:  145 PSFIVRLDSQKHIDFSLRSPY 165
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.259e-54
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 2 
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145

HSP 2 Score: 35.8094 bits (81), Expect = 1.259e-54
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSF+VR+DSQK I+FSL SP+
Sbjct:  145 PSFIVRLDSQKHIDFSLRSPY 165
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.259e-54
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 2 
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145

HSP 2 Score: 35.8094 bits (81), Expect = 1.259e-54
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSF+VR+DSQK I+FSL SP+
Sbjct:  145 PSFIVRLDSQKHIDFSLRSPY 165
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.259e-54
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 2 
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145

HSP 2 Score: 35.8094 bits (81), Expect = 1.259e-54
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSF+VR+DSQK I+FSL SP+
Sbjct:  145 PSFIVRLDSQKHIDFSLRSPY 165
[Close]
BLAST of EY665879 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.259e-54
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = 2 
Query:   98 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIP 502
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIP
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 145

HSP 2 Score: 35.8094 bits (81), Expect = 1.259e-54
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  501 PSFVVRVDSQKPIEFSLTSPF 563
            PSF+VR+DSQK I+FSL SP+
Sbjct:  145 PSFIVRLDSQKHIDFSLRSPY 165
The following BLAST results are available for this feature:
BLAST of EY665879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS92_ARATH1.321e-7893.1540S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH4.560e-7690.4140S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN1.662e-5772.6640S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DICDI4.009e-5671.7440S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_DROME1.967e-5570.8040S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT1.259e-5471.1140S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN1.259e-5471.1140S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE1.259e-5471.1140S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN1.259e-5471.1140S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN1.259e-5471.1140S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665879 ID=EY665879; Name=EY665879; organism=Citrus sinensis; type=EST; length=833bp
GCTTTTACAAAGATCGCCCATAGAGAGAGAGAGAGAGTGAGGGTAGCACC
AGCGGCGCGCAAAGATGGTGCACGTTTCATTCTACCGCAACTATGGGAAA
ACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAGCGATTGGATGCTGA
GTTGAGGCTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCTGGA
GGGTTCAATATGCATTGAGCCGCATCCGAAATGCTGCGAGGGATCTTCTC
ACTCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGTGAGGCCCTTCT
CAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCAGAACAAGCTTG
ATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGCGTCGTCTCCAG
ACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCACCATGCTCGAGT
GCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCTTGTCAACATTC
CCCTCATTTGTAGTGAGGGTTGATTCCCAAAAACCCATTGAATTCTCCCT
CACAAGTCCCTTCGGAGGTGGGCGGCCCTGGAAAAAGTGGAAAAAAGGAA
CCTCAACGCTGCTGCCAAGAAGGCCGCAGGTGGAGATGGCGGATAAATAT
GCATGACCAATACATTACACGGCGTGACAGCGATTCGTCGTTTCTCCCGT
TAAACGAGGGACTTCTGGCCTATCCTCCCAAAAGTCGCATTCCCCCTCCC
ACTCCCCCGGGTTCATATCATGGTCAGCACCCGCGCGATTCACCGAGGGC
CGCTCACAATTTCACTAGGATTTAATGAGGAAA
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