CK937484

Overview
NameCK937484
Unique NameCK937484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: U161_ARATH (UPF0161 protein At3g09310 OS=Arabidopsis thaliana GN=At3g09310 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.122e-37
Identity = 85/186 (45.70%), Postives = 112/186 (60.22%), Query Frame = 1
Query:   19 MAVSLNCHNKPLSTSLNFQNPNFSSSKYHRK-NQNHISAFRLPAKTKTH-RIVTVRGLGTDSDPNTPQEGLRSPSLSLLSTEKKGKNSIF*LLDSEICWVLDF*LDDKEVNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDPPRWFDE 570
            MAV ++ H   ++ +++    N +  K HR+ N++ +    LP  TK   R ++ +   +  DP +PQ+G                                     +E+ S+GV+AAL+ML FYKREISP++PRSCRYVPTCSEYSM+AYKKYGV+KGTVLT WRLCRCNPLGGSGFDPPRWF E
Sbjct:    1 MAVVISIHRPYVTLTIS---KNRNPLKPHRQFNESCLRFDHLPRNTKNQLRCLSAKSTPSKPDPASPQDG-------------------------------------EELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSMEAYKKYGVLKGTVLTTWRLCRCNPLGGSGFDPPRWFGE 146          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1017_SALRD (UPF0161 protein SRU_1017 OS=Salinibacter ruber (strain DSM 13855) GN=SRU_1017 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  367 LSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDPPRWFDEESP 579
            + ++  Y+  +SP + R+CR+ PTCS Y++QA+++YG +KG VLT  RL RC+P GG G+DPPRWFDEE P
Sbjct:   17 IGLVRLYQLVLSPHLGRTCRFHPTCSAYAIQAFREYGALKGLVLTVHRLLRCHPWGGHGYDPPRWFDEEHP 87          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y4526_CAUSK (UPF0161 protein Caul_4526 OS=Caulobacter sp. (strain K31) GN=Caul_4526 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  376 LSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDPP 555
            L  YK  +SP + R CRY+PTCSEY+ QA K +G +KG+ L   R+CRCNPLGGSG+DPP
Sbjct:   12 LKAYKTTLSPFIGRQCRYLPTCSEYAAQALKDHGPLKGSWLAVGRICRCNPLGGSGYDPP 71          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2412_THEPX (UPF0161 protein Teth514_2412 OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_2412 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            ++  Y+R ISP+ PRSCR+ PTCS+YS++A  KYG++KG +++ WR+ RCNP    G+DP
Sbjct:    8 LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNPFNPGGYDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2293_THEP3 (UPF0161 protein Teth39_2293 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=Teth39_2293 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            ++  Y+R ISP+ PRSCR+ PTCS+YS++A  KYG++KG +++ WR+ RCNP    G+DP
Sbjct:    8 LIKLYQRYISPMKPRSCRFYPTCSQYSIEAISKYGLLKGGIMSIWRILRCNPFNPGGYDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y1913_GLOVI (UPF0161 protein gsl1913 OS=Gloeobacter violaceus GN=gsl1913 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  358 RAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            RAA   + FY+R +SPL P +CRYVPTCSEY+ QA +++GV  G  L   RLCRC+PL   G+DP
Sbjct:    6 RAATGAIRFYQRFVSPLTPPTCRYVPTCSEYTRQAIERFGVAAGIWLGTKRLCRCHPLHPGGYDP 70          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2420_CYTH3 (UPF0161 protein CHU_2420 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=CHU_2420 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.677e-15
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  376 LSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            +  Y+  ISPL+P +CRY PTCSEY +QA +KYG +KG  L   R+C CNP GGSG+DP
Sbjct:   19 VKIYQYSISPLLPGACRYTPTCSEYCVQAIEKYGPLKGIWLGTKRICSCNPWGGSGYDP 77          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y2800_THETN (UPF0161 protein TTE2800 OS=Thermoanaerobacter tengcongensis GN=TTE2800 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.133e-14
Identity = 29/60 (48.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  373 MLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            ++  Y++ ISP+ PR+CR+ PTCS+YS++A  KYG++KG +++ WR+ RCNP    G+DP
Sbjct:    8 LIRLYQKYISPMKPRTCRFYPTCSQYSIEAISKYGLLKGGLMSIWRILRCNPFNPGGYDP 67          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y3056_PARD8 (UPF0161 protein BDI_3056 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=BDI_3056 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  382 FYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            FYK  IS + P SCRY PTCSEY++QA KKYG VKG  L   R+ RC+P GGSG+DP
Sbjct:   15 FYKYCISLMTPASCRYTPTCSEYAVQALKKYGPVKGLYLAVKRILRCHPWGGSGYDP 71          
BLAST of CK937484 vs. ExPASy Swiss-Prot
Match: Y317_NEIMF (UPF0161 protein NMC0317 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=NMC0317 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.933e-14
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  340 VNSLGVRAALSMLSFYKREISPLMPRSCRYVPTCSEYSMQAYKKYGVVKGTVLTAWRLCRCNPLGGSGFDP 552
            +N L  +  L ++ FY+  ISPL+P  CRY PTCS+Y+++A KKYG  KG  L   R+ RC+PLGG G DP
Sbjct:    1 MNFLLSKLLLGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPLGGHGHDP 71          
The following BLAST results are available for this feature:
BLAST of CK937484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
U161_ARATH2.122e-3745.70UPF0161 protein At3g09310 OS=Arabidopsis thaliana ... [more]
Y1017_SALRD5.807e-1953.52UPF0161 protein SRU_1017 OS=Salinibacter ruber (st... [more]
Y4526_CAUSK2.697e-1660.00UPF0161 protein Caul_4526 OS=Caulobacter sp. (stra... [more]
Y2412_THEPX1.025e-1551.67UPF0161 protein Teth514_2412 OS=Thermoanaerobacter... [more]
Y2293_THEP31.025e-1551.67UPF0161 protein Teth39_2293 OS=Thermoanaerobacter ... [more]
Y1913_GLOVI5.087e-1555.38UPF0161 protein gsl1913 OS=Gloeobacter violaceus G... [more]
Y2420_CYTH38.677e-1557.63UPF0161 protein CHU_2420 OS=Cytophaga hutchinsonii... [more]
Y2800_THETN1.133e-1448.33UPF0161 protein TTE2800 OS=Thermoanaerobacter teng... [more]
Y3056_PARD81.480e-1463.16UPF0161 protein BDI_3056 OS=Parabacteroides distas... [more]
Y317_NEIMF1.933e-1450.70UPF0161 protein NMC0317 OS=Neisseria meningitidis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_B10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937484 ID=CK937484; Name=CK937484; organism=Citrus sinensis; type=EST; length=665bp
AAGACTTGGACAGTTGAAATGGCGGTTTCACTTAACTGCCATAACAAACC
CTTGTCCACCTCGCTTAATTTCCAGAACCCTAATTTCAGTTCATCCAAAT
ATCACCGTAAAAACCAAAACCATATTTCCGCTTTTCGCCTTCCCGCGAAA
ACCAAAACGCACCGTATCGTAACCGTCCGTGGATTGGGCACTGACTCGGA
TCCGAACACTCCACAAGAAGGTCTGAGGTCCCCCTCACTCTCTCTTCTCT
CGACAGAAAAAAAAGGGAAAAATTCAATATTTTAACTTCTTGACTCTGAA
ATTTGCTGGGTTTTGGATTTTTAATTAGATGATAAAGAGGTCAATAGTTT
GGGAGTCAGAGCTGCACTATCTATGCTGAGCTTTTACAAAAGGGAAATCT
CGCCACTGATGCCGAGGAGTTGTAGATATGTGCCAACATGTAGTGAGTAC
TCAATGCAAGCGTACAAGAAATATGGAGTTGTAAAGGGCACTGTCTTGAC
TGCTTGGCGTCTCTGTCGCTGCAATCCTCTTGGTGGGTCCGGATTTGATC
CTCCTCGATGGTTTGATGAGGAAAGTCCACCTGAAGTATGACAGCATACG
GTCTAATAGCTGCCAAGCAAAATGGTNCNTTTCAGAGTCTTGAGGCTANN
NNTTCAGAGAACAAT
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