CK937439

Overview
NameCK937439
Unique NameCK937439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937439_ssr5 microsatellite CK937439_ssr5:5..24. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937439_ssr67 microsatellite CK937439_ssr67:67..76. BLAST: Citrus ESTs to Prunus persica proteins V1
CK937439_ssr122 microsatellite CK937439_ssr122:122..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2797 contig Csv1_Contig2797:27..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.221e-69
Identity = 128/166 (77.11%), Postives = 140/166 (84.34%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL DNG+TYCVV  ES+GRQIPMAFLERVK++F  +Y            LNKEFG KLKE MQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKT
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKT 166          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 3.554e-69
Identity = 127/166 (76.51%), Postives = 143/166 (86.14%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA +S+GRQIPMAFLERVK++F  +Y            LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 166          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 259.61 bits (662), Expect = 1.034e-68
Identity = 126/166 (75.90%), Postives = 141/166 (84.94%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+NG+TYCVVA ES GRQIPMAFLERVK++F  +Y            LN+EFG KLKE MQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKT
Sbjct:   66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKT 231          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.008e-68
Identity = 125/166 (75.30%), Postives = 143/166 (86.14%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV++G+TYCVVA +S+GRQIPM+FLERVK++F  +Y            LNKEFG KLKE MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 166          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.401e-57
Identity = 109/185 (58.92%), Postives = 138/185 (74.59%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKY-------------------XXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVDNG+ + VVADES+GR +P  FLERVK++F  +Y                               L++EFGP LKE MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIELLVDKT
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKT 185          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.549e-56
Identity = 105/162 (64.81%), Postives = 127/162 (78.40%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 648
            M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+NG+TYCVVA +S+GR+IPMAFLERVK++F  +Y            LNKEFG  LKE MQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG   E+L
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML 162          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.712e-55
Identity = 106/167 (63.47%), Postives = 128/167 (76.65%), Query Frame = 1
Query:  163 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNN-KFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            M Q+S IY+FVARG ++LAEYTEF+GNF SIA QCLQKLP+S+N KFTYNCD HTFN+LV++GY YCVVA +S  +QI +AFLERVK +F  +Y            LNKEFGP +KE M Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + +L DKT
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKT 167          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.973e-27
Identity = 66/163 (40.49%), Postives = 105/163 (64.42%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNK-FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N+   +Y+ D + F+    +G T   +A+E++GR+IP AFLE +   FV  Y            +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHTALAYA-MNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKT 162          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.497e-27
Identity = 66/164 (40.24%), Postives = 105/164 (64.02%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y+ D + F+    +G T   +ADE++GR IP AFL+ +   FV  Y            +N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKT
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYS-MNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKT 163          
BLAST of CK937439 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.150e-25
Identity = 63/163 (38.65%), Postives = 101/163 (61.96%), Query Frame = 1
Query:  175 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKF-TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYXXXXXXXXXXXXLNKEFGPKLKEPMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 660
            S++YA VARG VVLAE +  S N ++IA Q L+K+P + +   +Y+ D + F+    +G T   +ADE +GR+IP +FLE +   FV  Y            +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQAYA-MNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKT 162          
The following BLAST results are available for this feature:
BLAST of CK937439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA726_ARATH1.221e-6977.11Putative vesicle-associated membrane protein 726 O... [more]
VA722_ARATH3.554e-6976.51Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA725_ARATH1.034e-6875.90Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH3.008e-6875.30Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA727_ARATH1.401e-5758.92Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA723_ARATH1.549e-5664.81Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH1.712e-5563.47Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA711_ARATH1.973e-2740.49Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH7.497e-2740.24Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA712_ARATH3.150e-2538.65Vesicle-associated membrane protein 712 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004780_G01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937439 ID=CK937439; Name=CK937439; organism=Citrus sinensis; type=EST; length=660bp
GGGGCTCTCTCTCTCTCTCTCTCTCGCGTAAAAAAGCAAAGCATAGCAAC
AAACAAAATTGGAGAGGAGAGAGAGACCTCTTGGAGCTTTAAAACAAAAT
AAAAAATAAAAACAAGCCCAGATCTCATCTCATCTCAACTCGACTCAATT
AGTCTCATCAAAATGAGCCAGAAATCGCTGATCTACGCCTTCGTGGCGCG
CGGAAATGTTGTGCTTGCTGAGTACACTGAGTTCAGTGGCAATTTCAACT
CCATAGCCTATCAGTGCCTCCAGAAACTCCCTGCTTCCAACAACAAGTTC
ACTTACAACTGTGATGCTCACACCTTCAATTATCTCGTCGATAATGGTTA
CACATATTGTGTGGTCGCAGATGAATCGTCCGGAAGACAAATACCGATGG
CTTTTCTGGAGCGCGTCAAGGATGAATTTGTTTCCAAATATGGAGGTGGA
AAGGCTNNNNCGGCTCCTGCCAATGGCCTGAACAAGGAATTTGGACCAAA
ATTGAAAGAACCTATGCAGTACTGTGTTGATCATCCTGAGGAGATCAGCA
AGCTTGCGAAGGTTAAGGCTCAGGTTTCAGAAGTCAAAGGTGTTATGATG
GAGAATATTGAAAAGGTTTTAGATAGGGGGGAAAAGATTGAGCTACTGGT
CGATAAGACT
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