FC921778

Overview
NameFC921778
Unique NameFC921778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13550 contig Csv1_Contig13550:5..249. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921778 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.516e-14
Identity = 39/77 (50.65%), Postives = 45/77 (58.44%), Query Frame = 2
Query:    2 YWAHPIAWTLYGLVASQFGDMDHKKMDTGETVKQFLKDYFDFQHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 232
            YWA+P+AWTLYGLVASQFGD+  K  D  ETV+QFL+ YF F+HD                       IK FNFQRR
Sbjct: 1359 YWANPVAWTLYGLVASQFGDIQTKLSD-NETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of FC921778 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.605e-13
Identity = 37/77 (48.05%), Postives = 42/77 (54.55%), Query Frame = 2
Query:    2 YWAHPIAWTLYGLVASQFGDMDHKKMDTGETVKQFLKDYFDFQHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 232
            YW  PIAWTLYGLVASQFGD+     D  +TV+QFL+  F F+HD                      GIK FNFQRR
Sbjct: 1360 YWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of FC921778 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.774e-12
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 2
Query:    5 WAHPIAWTLYGLVASQFGDMDHKKMDTGETVKQFLKDYFDFQHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 232
            WA P+AWTLYGLVASQ+GD+ +  ++ GE V+ +++ YF F+HD                       IK+FNFQRR
Sbjct: 1369 WACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
BLAST of FC921778 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.371e-11
Identity = 33/77 (42.86%), Postives = 38/77 (49.35%), Query Frame = 2
Query:    2 YWAHPIAWTLYGLVASQFGDMDHKKMDTGETVKQFLKDYFDFQHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 232
            YWA P+AWTLYGLV SQFG+      D  ETVK FL+ +  F+HD                       IK  NFQRR
Sbjct: 1365 YWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of FC921778 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 2
Query:    2 YWAHPIAWTLYGLVASQFGDMDHKKMDTGETVKQFLKDYFDFQHDXXXXXXXXXXXXXXXXXXXXXXGIKMFNFQRR 232
            YW  P+AWTLYGL+ASQFGD+     D+  +VKQF+++++ ++                        GIK FNFQ+R
Sbjct: 1347 YWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
The following BLAST results are available for this feature:
BLAST of FC921778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PDR1_TOBAC5.516e-1450.65Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL1.605e-1348.05Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR7_ORYSJ1.774e-1242.11Putative pleiotropic drug resistance protein 7 OS=... [more]
TUR2_SPIPO4.371e-1142.86Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
AB40G_ARATH9.737e-1137.66ABC transporter G family member 40 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC06052C02T7 RindPdigS Citrus sinensis cDNA clone C06052C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921778 ID=FC921778; Name=FC921778; organism=Citrus sinensis; type=EST; length=245bp
CTATTGGGCCCACCCCATAGCTTGGACCTTGTATGGACTGGTTGCTTCCC
AGTTCGGAGATATGGACCACAAGAAAATGGATACTGGTGAAACGGTGAAA
CAGTTTCTTAAGGACTATTTTGATTTCCAACATGATTTTCTGGGAGTAGT
TGCAGCCGTTCTCGTTGTCTTTGCAGCATTATTTGAATTTCTCTTCCCCC
TAGGAATTAAGATGTTTAACTTCCAGAGGCGATAGTAATTCTGAT
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