EY665868

Overview
NameEY665868
Unique NameEY665868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665868 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.512e-16
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  127 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQANSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGRLRQQYGLAKSANEVILV 444
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E +++
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIM 107          

HSP 2 Score: 35.039 bits (79), Expect = 5.512e-16
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  446 IEAYKALRDRAPLPTRNHVVGPLRAYFAFLVYE 544
            +EAYK LRDRAP P  + V+  L   FAF++++
Sbjct:  108 VEAYKVLRDRAPYPP-DQVIKELEGKFAFILFD 139          
The following BLAST results are available for this feature:
BLAST of EY665868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC5.512e-1636.11Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-E08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665868 ID=EY665868; Name=EY665868; organism=Citrus sinensis; type=EST; length=865bp
CCCACGCGTCCGGATTTGAACTTTCCAGTTAAAGCCAAAGAGTTCCGAAC
GGATCAAAGTTTTCTTGTAGGAGAGAGAAATTTCTAGGGCGAGAAAGCGA
GAGAAAAGGAAATTTGGTAGCTTAAAATGTTGGGAGTGTTCAGCAGCGCG
ATCGTTTCACCTCCAGAGGAGCTGGTGGCGGCCGGAAGCCGGACTCCGTC
GCCGAAGACCACATCGACGGCACTGGTCGACCGTTTCCTCCAGGCCAACT
CGTCTGCTGTGTCCGTACAGGTCGGGGACAACGTCACCCTCGCGTACACT
CATCAGAACGAGTCTCCTTTACGGCAAAGATCATTTGCTGTGAAAGATGA
GATCTTCTGCTTGTTTGAGGGAGCACTTGATAACTTGGGAAGGCTGAGGC
AGCAATATGGACTAGCTAAGTCGGCAAATGAAGTGATCTTGGTGGATTGA
GGCATACAAGGCTCTGCGTGATCGGGCCCCCTTACCCACCCGAAACCATG
TCGTTGGCCCCCTTAGGGCGTACTTTGCCTTCCTTGTCTACGAACAAGCC
CACCTCCACCCTTGTTTGGTGGCTTCCGACCAATTTAGGTACGGTCCCTC
TTTATTCGGGGAAATCCCTCCTGCCGCACCTGCTGGCCCTTTCCTACTGA
TGCCTAATCGGCGACAGGGCGCTAGCGGCAAGCCCCACTGCTTCCCTTTC
CTCACGGGTGGTCTCTCGTCTACGAAAAGCTGTGAGGGACGGAAACCTCG
CCACGACAACCCCCCGCACTCTGACCCTTGACTAGACCCGCTGCAACCCG
GAGTACCATATGACAGTCCCTCGCTTCCTTTCCCATGAGAATCGCAAAAA
AAATCCAATAGACCT
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