EY665867

Overview
NameEY665867
Unique NameEY665867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665867 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.332e-12
Identity = 45/162 (27.78%), Postives = 83/162 (51.23%), Query Frame = 2 
Query:   38 MVDAIVSSLLEQLISVAADEVKQQVRLVTGVREEVKKLTSNLQAIQLVLEDAEKRQMQDDKAVTFWLDQLKGASYDMEDVLEEWTTARLKLQIEGLDDDNTLALPAHKKKVCSFFPSASNCFGSFKKLSLRHDIAVKIREINKTLDDITSQKDRFKFAENVS 523
            M +A +  LLE L S   D++     L+ G  +E +KL+S    IQ VL+DA+++Q++D KA+  WL +L  A+Y+++D+L E     ++ +               + ++  + P   N          RH I  +++EI + LD I+ ++ +F F E ++
Sbjct:    1 MAEAFLQVLLENLTSFIGDKLV----LIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKD-KAIENWLQKLNSAAYEVDDILGECKNEAIRFE---------------QSRLGFYHPGIIN---------FRHKIGRRMKEIMEKLDAISEERRKFHFLEKIT 133

HSP 2 Score: 24.2534 bits (51), Expect = 1.332e-12
Identity = 15/49 (30.61%), Postives = 22/49 (44.90%), Query Frame = 1 
Query:  619 KLLCESSEQQTRFHVLSLIGVRGN*EKPPLAQLTHNNNDVKKNFEKLFW 765
            K+L  +        V  +IG+ G   K  LAQ+  N+  V K+F    W
Sbjct:  165 KILINNVNVAEELPVFPIIGM-GGLGKTTLAQMIFNDERVTKHFNPKIW 212
The following BLAST results are available for this feature:
BLAST of EY665867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RGA4_SOLBU1.332e-1227.78Putative disease resistance protein RGA4 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665867 ID=EY665867; Name=EY665867; organism=Citrus sinensis; type=EST; length=837bp
CTAATAACTCTTCAGAATTCTCGTCTTCTTTGTCAGAATGGTTGATGCGA
TCGTTTCCTCTCTCCTGGAGCAGCTGATCTCTGTTGCGGCTGATGAAGTG
AAACAACAGGTGAGGCTTGTGACTGGTGTCCGAGAAGAAGTGAAAAAGCT
TACCAGCAATCTTCAAGCCATTCAACTTGTGCTGGAAGATGCAGAGAAAA
GGCAAATGCAGGACGACAAAGCTGTTACTTTTTGGCTGGATCAGCTCAAA
GGCGCATCTTACGACATGGAAGATGTGTTGGAGGAGTGGACCACTGCAAG
GCTCAAATTGCAGATTGAGGGCCTTGACGATGACAATACTCTTGCTCTTC
CTGCTCATAAGAAGAAGGTATGTTCCTTCTTTCCTTCTGCCTCAAACTGC
TTCGGTAGTTTCAAAAAACTCAGTCTTCGTCATGACATTGCTGTCAAGAT
TAGAGAGATCAATAAAACGCTGGATGATATTACCTCTCAAAAAGATAGGT
TTAAATTTGCTGAGAATGTGAGTAACAATGTCAAGAAGCCAAAGCGAGTG
GGAACCCACCTCCTTGGTTGATGAGGGAGAGGTTTGCGGTAGAGTTGATG
AAAAAAATGAGCTCTGCAAAGTTGTTGTGCGAAAGTAGTGAACAACAAAC
AAGGTTTCATGTCCTCTCACTAATTGGGGTTAGGGGGAATTAGGAAAAAC
CCCCTCTTGCACAACTAACCCATAATAATAATGATGTGAAAAAAAATTTT
GAAAAACTTTTTTGGGGGGGTGGTTTCAAACCTTTTGAAGAAAATTTGGG
TTGGCCCCAACCATCCTTTTGAAGGGCCTAGGGGAGC
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