EY665863

Overview
NameEY665863
Unique NameEY665863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe GN=cox12 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  359 DQEASEETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            +QE  E   +    T   D RFP TNQT+HCF  YI+Y RC+ AKGE    C +F   Y++LCP +W+E+W+EQRENG
Sbjct:    3 EQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENG 80          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: COX12_YEAST (Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae GN=COX12 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  395 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            L T   D RFP  NQT+HC+  Y++YH+CV  KGE    C  F K Y ALCP DWIEKW++QRE G
Sbjct:    9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQREKG 74          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B2_HUMAN (Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.155e-14
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  371 SEETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCV---AAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            ++E P+ K  T P D RFP+ NQ R+C+  +++YHRC+     +G+    C+ + + Y +LCP  W+E WNEQ +NG
Sbjct:    6 AQEPPKGKWSTPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQIKNG 82          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B1_PONAB (Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  377 ETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            ET     +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP+ W+  W+EQR  G
Sbjct:    6 ETKLKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEG 80          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B1_MACMU (Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  371 SEETPEIKLE---TAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            +EE  E K++   TAP D RFP  NQTR+C+  Y+++HRC   +  KG     C+ + + Y++LCP+ W+  W+EQR  G
Sbjct:    2 AEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRAEG 81          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B1_MACFA (Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  371 SEETPEIKLE---TAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            +EE  E K++   TAP D RFP  NQTR+C+  Y+++HRC   +  KG     C+ + + Y++LCP+ W+  W+EQR  G
Sbjct:    2 AEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTDWDEQRAEG 81          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B1_HUMAN (Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.342e-13
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  377 ETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            ET     +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP+ W+  W+EQR  G
Sbjct:    6 ETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTDWDEQRAEG 80          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B2_RAT (Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  401 TAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            T P D RFP  NQTR+C+  +++YHRCV     +G+    CD + + + +LCP  W+++WNEQ + G
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWVQRWNEQIKQG 82          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B2_MOUSE (Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  371 SEETPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            +++ P  +  T P D RFP  NQTR+C+  +++YHRCV     +G+    C+ + + + +LCP  W+++WNEQ + G
Sbjct:    6 AQKPPPGQWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWVQRWNEQIKQG 82          
BLAST of EY665863 vs. ExPASy Swiss-Prot
Match: CX6B1_BOVIN (Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  398 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENG 592
            +TAP D RFP  NQTR+C+  Y+++HRC   + AKG     C+ + + Y++LCP  W+  W+++R  G
Sbjct:   13 QTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEG 80          
The following BLAST results are available for this feature:
BLAST of EY665863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COX12_SCHPO1.549e-1850.00Cytochrome c oxidase subunit 6B OS=Schizosaccharom... [more]
COX12_YEAST8.498e-1756.06Cytochrome c oxidase subunit 6B OS=Saccharomyces c... [more]
CX6B2_HUMAN5.155e-1440.26Cytochrome c oxidase subunit 6B2 OS=Homo sapiens G... [more]
CX6B1_PONAB3.342e-1342.67Cytochrome c oxidase subunit 6B1 OS=Pongo abelii G... [more]
CX6B1_MACMU3.342e-1341.25Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta... [more]
CX6B1_MACFA3.342e-1341.25Cytochrome c oxidase subunit 6B1 OS=Macaca fascicu... [more]
CX6B1_HUMAN3.342e-1342.67Cytochrome c oxidase subunit 6B1 OS=Homo sapiens G... [more]
CX6B2_RAT1.658e-1241.79Cytochrome c oxidase subunit 6B2 OS=Rattus norvegi... [more]
CX6B2_MOUSE2.166e-1236.36Cytochrome c oxidase subunit 6B2 OS=Mus musculus G... [more]
CX6B1_BOVIN2.829e-1241.18Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665863 ID=EY665863; Name=EY665863; organism=Citrus sinensis; type=EST; length=862bp
CAGCTGAAGAAAGTAGATCGCTTTTTGCCCATCAATGGCGGAAGCCCAAA
GCGACAAAACTCCCTCCCTAGCCGAGGATTATTTGTTGGAAAAAGAGAAG
CAAGATGTAGCTACAAAACCTGTGGTAGTAAAAGAAGTTGAGAGTGCAGT
GACTGCCTCTTCTGTGGAAGGTGCCACTGATAAAGTTGAAGAAACACCTG
CTGCCGCCGCTGTTGAAGAAAGCAAAGAAGACGCCCCTGCTCCTGCCGCT
GAAGAAAGCACTGAAGCCAGTTCTGCTTCTCCTGAGGACAGCACTAGTGA
TACGGCTCCAGCTGCTGCTGAGGAAAGCAGTGAAACTACGGAAGAGGAAA
ACTCAGGTGATCAGGAAGCCTCAGAAGAGACACCAGAAATAAAGCTGGAG
ACTGCACCGGCAGATTTCCGTTTCCCAACCACAAATCAAACAAGGCACTG
CTTTACCCGATATATTGAGTATCATCGGTGTGTAGCTGCTAAGGGAGAGG
GTGCTCCAGAGTGTGATAAGTTTGCAAAATATTACCGTGCTCTGTGCCCT
AGTGACTGGATAGAAAAATGGAATGAGCAAAGAGAAAACGGGAACCTTTC
CCGGTCCTCTGTAGGTGGGTGCCATTTTTACGAACTTGGGTGTGATTCGC
CATCCTCGGTTAAATTAAAGTTGCTACTCCAAATCCAAAGGAGTAATTTC
TTGAATGGGAAGTGGTTTCTCAGGGATCTTTTCCTAAAATCAAGGAGTTA
ATAATTTTTTTTTTGAATTGCCCTAATAAATGGTTGGTCCAAGGTCCCCA
TTACCCCGGGGTTATCTCTCTTCCTTAAAAAAGAATTTTTTTTTTCCCTC
CAACACCCCCAC
back to top