FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:31..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.375e-41
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.225e-41
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.912e-41
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.912e-41
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.520e-40
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFET+
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETS 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.985e-40
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.985e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.593e-40
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_WHEAT1.375e-4198.80Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ORYSJ1.375e-4198.80Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE1.375e-4198.80Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_MANES5.225e-4197.59Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC8.912e-4197.59Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH8.912e-4197.59Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_VICFA1.520e-4096.39Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_SOYBN1.985e-4096.39Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A1_DAUCA1.985e-4097.56Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_SOLLC2.593e-4096.39Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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