EY665850

Overview
NameEY665850
Unique NameEY665850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665850 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.973e-30
Identity = 73/110 (66.36%), Postives = 79/110 (71.82%), Query Frame = 1
Query:   97 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTAGK 423
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T GK
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGK 110          
BLAST of EY665850 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.789e-20
Identity = 61/145 (42.07%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   97 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTAGKANWTYLGTLGTRSSIPNNTGLIWSLPGSTSFL 519
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK  G          G        TG    + GS+  +
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLI 144          
BLAST of EY665850 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  271 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK 411
            T++KPLGDRV VK+   EEKT GGIFLP AA+ KPQ GEVVAVG GK
Sbjct:    9 TTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGK 55          
BLAST of EY665850 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  271 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK 411
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGK 55          
BLAST of EY665850 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  271 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK 411
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGK 55          
BLAST of EY665850 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query:  271 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK 411
            +++KPLGDRV VK+   EEKT GGI LP +A+ KPQ GEVVAVGEGK
Sbjct:    9 STLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGK 55          
The following BLAST results are available for this feature:
BLAST of EY665850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CH10C_ARATH2.973e-3066.3620 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL2.789e-2042.0720 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_MICAN8.134e-1272.3410 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_SYNJB5.273e-1170.2110 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA5.273e-1170.2110 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]
CH10_SYNP26.886e-1168.0910 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665850 ID=EY665850; Name=EY665850; organism=Citrus sinensis; type=EST; length=855bp
CAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTAT
CATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGG
CGACAGCTCAGCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTG
ACTTCATTCGATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGG
AGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTG
CAGTCGTGGCTCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTG
CTGGTGAAAATCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCT
GCCATCTGCAGCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTG
GCGAGGGGAAAACAGCTGGGAAGGCTAACTGGACCTATCTGGGAACCCTG
GGAACCCGCTCCTCCATTCCCAACAACACAGGACTGATCTGGAGTCTGCC
CGGCTCAACATCTTTCCTGGCGGGGAAGAAGACCAGCGGGGGGACTCACA
CAGCACACCACATAACCCCTCGCCGGACAACTCAAAACGGCTCCGCCTCA
CCCACCCGCCCCCCAAGCAGCCAGCAGGCCGCACCCGCCACCCGCCACCC
AGAACCCCCGGCACCCACCCCGCAGCTGGAACGACACGCCAACGGGAGCA
AACAAAGTACTAAGGGGAGGACCGCCCGGCGCACACAGGCACGCCAGGAC
GGCCGCGACACGCCCCCCCGAGCGTGGCCACTCACCGCATGGAAGACCCC
TCACGCACCGCCGTGCTACCCACAGACCCCAACCGCCCCCGGCACAATCA
TACCC
back to top