CK936874

Overview
NameCK936874
Unique NameCK936874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936874_ssr467 microsatellite CK936874_ssr467:467..478. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:151..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.735e-32
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            P T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA    +CGVSIPYKISP+TDCS+V+
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGL  +CGVS+PYKISP+TDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.773e-31
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA L  +CGV+IPY+ISP+T+C+ V+
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.157e-31
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA L  +CGV++PYKISP+T+C+ V+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.366e-30
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  129 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGL  +CGV++PYKIS +T+C+ V+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.827e-29
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            ITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA L  +CGV IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.970e-28
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            ITCGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA L  +CGV+IPYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            +TCGQVTG+LAPC+ +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGL  +CGV+IPYKISP TDC+RV
Sbjct:   28 LTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  141 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            ITCGQV+ +LAPCI +++ GG  PP  CCNG+R++N  ARTT DR+AACNCLKQ   SIPG+N N AA L  +CGV++PYKIS +T+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 53/96 (55.21%), Postives = 73/96 (76.04%), Query Frame = 3
Query:  129 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            V +AITC QV+ +LAPCI ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  L  +CGV++PYKIS +T+C+ V+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of CK936874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_HELAN2.735e-3265.98Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI1.357e-3169.57Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDU1.773e-3161.86Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV5.157e-3159.79Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO4.366e-3062.50Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE4.827e-2963.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR6.970e-2861.96Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_DAUCA2.649e-2760.87Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUDO2.649e-2759.78Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO5.901e-2755.21Non-specific lipid-transfer protein OS=Pyrus commu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_A09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936874 ID=CK936874; Name=CK936874; organism=Citrus sinensis; type=EST; length=672bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTCCATGCATCGCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGC
AAGCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTT
TCTCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGA
CTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTT
GTATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTT
TGAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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