CK936872

Overview
NameCK936872
Unique NameCK936872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK936872_ssr16 microsatellite CK936872_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3937 contig Csv1_Contig3937:130..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOX_POPTR (NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3)

HSP 1 Score: 359.377 bits (921), Expect = 4.557e-100
Identity = 176/193 (91.19%), Postives = 185/193 (95.85%), Query Frame = 2
Query:   68 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            MEST+KEMRDGASVLD D KSTV GGVEDVYGEDRATEDQLVTPWTISVASGY LLRDP HNKGLAFTEKERDAHYLRGLLPP  ISQQLQEKKLMN+IRQY++PLQKY AMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIF+RPQGLYISLKEKGK+L+VLKNWP++SIQVIVVTDGERI
Sbjct:    1 MESTLKEMRDGASVLDMDPKSTVGGGVEDVYGEDRATEDQLVTPWTISVASGYTLLRDPHHNKGLAFTEKERDAHYLRGLLPPTTISQQLQEKKLMNTIRQYQLPLQKYTAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKVLDVLKNWPQKSIQVIVVTDGERI 193          

HSP 2 Score: 25.409 bits (54), Expect = 4.557e-100
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTALGG+RP
Sbjct:  208 VGKLSLYTALGGVRP 222          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOX_VITVI (NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 5.019e-96
Identity = 169/193 (87.56%), Postives = 183/193 (94.82%), Query Frame = 2
Query:   68 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVASGY LLRDPRHNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER IQVIVVTDGERI
Sbjct:    1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPRHNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERRIQVIVVTDGERI 193          

HSP 2 Score: 25.409 bits (54), Expect = 5.019e-96
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTALGG+RP
Sbjct:  208 VGKLSLYTALGGVRP 222          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 2.100e-82
Identity = 144/207 (69.57%), Postives = 174/207 (84.06%), Query Frame = 2
Query:   41 KAEKVKRVRMESTMKEMRDGASVLDFDSKS-----TVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            + E+   V ++  +K++    +V   DS+S      V GGVEDVYGED ATED  +TPW++SVASGY LLRDP HNKGLAFTEKERDAHYLRGLLPP V++  LQ KK+M++IRQYEVPLQ+Y AMM+L+ERNERLFYKLLI+N+EELLP+VYTPTVGEACQKYG+IF+ PQGLYISLK+KGK+LE+LKNWP++ IQVIVVTDGERI
Sbjct:   43 RPERSVGVSVDGAVKDVNAPVAVEVADSESKKPTAVVGGGVEDVYGEDSATEDHFITPWSVSVASGYSLLRDPHHNKGLAFTEKERDAHYLRGLLPPVVVNHDLQVKKMMHNIRQYEVPLQRYQAMMDLQERNERLFYKLLIENIEELLPIVYTPTVGEACQKYGTIFKNPQGLYISLKDKGKVLEILKNWPQKKIQVIVVTDGERI 249          

HSP 2 Score: 25.7942 bits (55), Expect = 2.100e-82
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTALGGIRP
Sbjct:  264 VGKLSLYTALGGIRP 278          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOX_PHAVU (NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 7.933e-82
Identity = 143/169 (84.62%), Postives = 159/169 (94.08%), Query Frame = 2
Query:  140 GGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            GGV D+YGED ATED L+TPWT SVASG  LLRDPR+NKGLAFTE ERDAHYLRGLLPP+V +Q+LQEK+LM+++RQYEVPL +Y+A+M+L+ERNERLFYKLLIDNV ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPE+SIQVIVVTDGERI
Sbjct:   23 GGVRDLYGEDSATEDHLITPWTFSVASGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPSVFNQELQEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKLLIDNVAELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERI 191          

HSP 2 Score: 25.409 bits (54), Expect = 7.933e-82
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTALGG+RP
Sbjct:  206 VGKLSLYTALGGVRP 220          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOC_SOLLC (NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.236e-79
Identity = 139/174 (79.89%), Postives = 159/174 (91.38%), Query Frame = 2
Query:  125 KSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            +STV GGV+DVYGED ATEDQ +TPWT+SVASG+ LLR+P +NKGLAF+E+ERD HYLRGLLPP VIS  LQ KK+MNSIR+Y+VPLQ+Y+AMM+L+E NERLFYKLLIDNVEELLP+VYTPTVGEACQKYG IF+RPQGL+ SLKEKGKI EVLKNWPE+ IQVIVVTDGERI
Sbjct:    4 ESTVTGGVQDVYGEDSATEDQSITPWTLSVASGFSLLRNPHYNKGLAFSERERDTHYLRGLLPPVVISHDLQVKKMMNSIRKYDVPLQRYMAMMDLQEMNERLFYKLLIDNVEELLPIVYTPTVGEACQKYGWIFKRPQGLFFSLKEKGKIHEVLKNWPEKKIQVIVVTDGERI 177          

HSP 2 Score: 24.2534 bits (51), Expect = 1.236e-79
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LY+ALGGIRP
Sbjct:  192 VGKLSLYSALGGIRP 206          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOC_FLATR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 2.561e-78
Identity = 133/173 (76.88%), Postives = 156/173 (90.17%), Query Frame = 2
Query:  128 STVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            + V GGVED+YGED ATED  +TPW++SVASGY LLRDP HNKGLAFTEKERDAH+LRGLLPP V++  LQ KK+M++IRQY+VPLQ+Y AMM+L++RNERLFYKLLI+NVEELLP+VYTPTVGEACQKYGSIF   QGL+ISLK+KG+ILE+LKNWP + IQVIVVTDGERI
Sbjct:   77 AAVGGGVEDMYGEDTATEDHYITPWSVSVASGYSLLRDPHHNKGLAFTEKERDAHFLRGLLPPVVVNHDLQVKKMMHNIRQYQVPLQRYQAMMDLQQRNERLFYKLLIENVEELLPIVYTPTVGEACQKYGSIFENSQGLFISLKDKGRILEILKNWPHKKIQVIVVTDGERI 249          

HSP 2 Score: 25.7942 bits (55), Expect = 2.561e-78
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTALGG+RP
Sbjct:  264 VGKLALYTALGGVRP 278          

HSP 3 Score: 21.557 bits (44), Expect = 2.561e-78
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  654 LGILAXRGWEFPVGKLA 704
            LG L  +G   PVGKLA
Sbjct:  252 LGDLGCQGMGIPVGKLA 268          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOX_MESCR (NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 6.646e-78
Identity = 134/171 (78.36%), Postives = 160/171 (93.57%), Query Frame = 2
Query:  134 VEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            + GGV DVYGE+ AT+DQLVTPW+ SVA G+ LLRDP+HNKGLAFTEKERDAH+LRGLLPP V+SQ+LQEKK + ++RQY+VPLQKY+AMM+L+ERNE+LFYKLL+D+VEELLP+VYTPTVGE CQKYGSIFRRPQGL+ISLK+KG+ILE+L+NWPE+ IQVIVVTDGERI
Sbjct:   17 ITGGVADVYGEEFATQDQLVTPWSFSVACGHSLLRDPQHNKGLAFTEKERDAHFLRGLLPPVVLSQELQEKKFLTTLRQYQVPLQKYMAMMDLQERNEKLFYKLLVDHVEELLPLVYTPTVGEGCQKYGSIFRRPQGLFISLKDKGRILELLRNWPEKKIQVIVVTDGERI 187          

HSP 2 Score: 20.7866 bits (42), Expect = 6.646e-78
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LY+ALGG+ P
Sbjct:  202 VGKLSLYSALGGVCP 216          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOC_ORYSJ (NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 4.265e-77
Identity = 141/199 (70.85%), Postives = 166/199 (83.42%), Query Frame = 2
Query:   50 KVKRVRMESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            +V+ V MES  +  +        +  +   GGVED+     ATE+  VTPW  SVASGY LLRDP HNKGLAF+EKERDAHYLRGLLPPAV+SQ LQ KK+M+++RQY VPLQ+Y+AMM+L+ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFR+PQGLY+SLK+KGK+L+VL+NWPER+IQVIVVTDGERI
Sbjct:   55 RVEAVAMESAAETEKK-------EEVAAAGGGVEDM-----ATEEVPVTPWAFSVASGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPAVVSQDLQVKKIMHNLRQYSVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGLYVSLKDKGKVLDVLRNWPERNIQVIVVTDGERI 241          

HSP 2 Score: 25.409 bits (54), Expect = 4.265e-77
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTALGG+RP
Sbjct:  256 VGKLSLYTALGGVRP 270          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOC_MAIZE (NADP-dependent malic enzyme, chloroplastic OS=Zea mays GN=MOD1 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.760e-69
Identity = 123/158 (77.85%), Postives = 140/158 (88.61%), Query Frame = 2
Query:  173 ATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            A+E+  V PW  SVASGY LLRDP HNKGLAFTE+ERD HYLRGLLPPAV+SQ+LQ KK MN++RQY+ PLQ+Y+AMM L+E +ERLFYKLLIDNV ELLP VYTPTVGEACQKYGSIF RPQGLY+SLK+KGK+LEVL+NWP R+IQVI VTDGERI
Sbjct:   81 ASEELPVMPWATSVASGYTLLRDPHHNKGLAFTEEERDGHYLRGLLPPAVLSQELQIKKFMNTLRQYQTPLQRYIAMMNLQETDERLFYKLLIDNVVELLPFVYTPTVGEACQKYGSIFGRPQGLYVSLKDKGKVLEVLRNWPHRNIQVICVTDGERI 238          

HSP 2 Score: 23.0978 bits (48), Expect = 1.760e-69
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTALGG+ P
Sbjct:  253 VGKLALYTALGGVDP 267          

HSP 3 Score: 21.557 bits (44), Expect = 1.760e-69
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  654 LGILAXRGWEFPVGKLA 704
            LG L  +G   PVGKLA
Sbjct:  241 LGDLGCQGMGIPVGKLA 257          
BLAST of CK936872 vs. ExPASy Swiss-Prot
Match: MAOM_HUMAN (NAD-dependent malic enzyme, mitochondrial OS=Homo sapiens GN=ME2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.962e-39
Identity = 70/142 (49.30%), Postives = 107/142 (75.35%), Query Frame = 2
Query:  221 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 646
            G  L+ +PR NKG+AFT +ER    L+GLLPP + +Q +Q  +   ++++   PL+KY+ +M ++ERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +  ++ NWPE  ++ +VVTDGERI
Sbjct:   25 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERI 166          

HSP 2 Score: 21.9422 bits (45), Expect = 1.962e-39
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 1
Query:  691 LGNWLLYTALGGIRP 735
            +G   LYTA  GIRP
Sbjct:  181 VGKLCLYTACAGIRP 195          
The following BLAST results are available for this feature:
BLAST of CK936872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAOX_POPTR4.557e-10091.19NADP-dependent malic enzyme OS=Populus trichocarpa... [more]
MAOX_VITVI5.019e-9687.56NADP-dependent malic enzyme OS=Vitis vinifera PE=2... [more]
MAOC_FLAPR2.100e-8269.57NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_PHAVU7.933e-8284.62NADP-dependent malic enzyme OS=Phaseolus vulgaris ... [more]
MAOC_SOLLC1.236e-7979.89NADP-dependent malic enzyme, chloroplastic (Fragme... [more]
MAOC_FLATR2.561e-7876.88NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_MESCR6.646e-7878.36NADP-dependent malic enzyme OS=Mesembryanthemum cr... [more]
MAOC_ORYSJ4.265e-7770.85NADP-dependent malic enzyme, chloroplastic OS=Oryz... [more]
MAOC_MAIZE1.760e-6977.85NADP-dependent malic enzyme, chloroplastic OS=Zea ... [more]
MAOM_HUMAN1.962e-3949.30NAD-dependent malic enzyme, mitochondrial OS=Homo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_A07 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936872 ID=CK936872; Name=CK936872; organism=Citrus sinensis; type=EST; length=735bp
GGGGAAGGGAGTGAGTGTTTGTTTGTTTTCGTTTTTGTGAAAAGCAGAAA
AAGTAAAAAGAGTGAGAATGGAGAGCACCATGAAGGAGATGAGAGACGGA
GCTTCGGTTCTCGACTTCGACTCGAAATCCACCGTCGAAGGCGGCGTTGA
AGACGTCTACGGTGAGGATCGTGCCACCGAGGACCAGCTCGTCACTCCCT
GGACCATCTCTGTTGCCAGCGGGTACTGTTTGTTGAGGGATCCACGCCAT
AACAAAGGGCTTGCTTTCACTGAGAAAGAGAGGGATGCCCACTACTTGCG
CGGCCTTTTGCCTCCAGCTGTTATAAGTCAACAACTTCAGGAGAAGAAAT
TGATGAACAGCATCAGACAATATGAAGTTCCGCTGCAAAAATATGTGGCC
ATGATGGAACTTGAGGAGAGAAATGAAAGACTGTTCTATAAGCTACTGAT
TGATAATGTTGAGGAACTTCTCCCAGTCGTTTACACTCCAACTGTTGGTG
AAGCTTGCCAGAAATATGGAAGTATCTTCAGGCGTCCTCAGGGTCTATAC
ATAAGTCTGAAAGAGAAGGGAAAGATTCTTGAGGTTTTGAAGAACTGGCC
TGAAAGGAGTATTCAGGTTATTGTTGTCACAGATGGTGAGCGCATTTTGG
GACTTGGGGATCTTGGCTNTCAGGGGATGGGAATTTCCTGTTGGGAAATT
GGCTTTTGTACACAGCACTTGGAGGCATTCGTCCC
back to top