CK936870 | Citrus Genome Database

Overview


Name	CK936870
Unique Name	CK936870
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	419

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:890..1308.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_WHEAT (Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_VITVI (Photosystem II reaction center protein I OS=Vitis vinifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_TOBAC (Photosystem II reaction center protein I OS=Nicotiana tabacum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_SPIOL (Photosystem II reaction center protein I OS=Spinacia oleracea GN=psbI PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_SOYBN (Photosystem II reaction center protein I OS=Glycine max GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_SORBI (Photosystem II reaction center protein I OS=Sorghum bicolor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_SOLTU (Photosystem II reaction center protein I OS=Solanum tuberosum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_SOLLC (Photosystem II reaction center protein I OS=Solanum lycopersicum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_SOLBU (Photosystem II reaction center protein I OS=Solanum bulbocastanum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936870 vs. ExPASy Swiss-Prot
Match: PSBI_SINAL (Photosystem II reaction center protein I OS=Sinapis alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK936870 vs. ExPASy Swiss-Prot

BLAST of CK936870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_WHEAT	7.187e-14	100.00	Photosystem II reaction center protein I OS=Tritic...	[more]
PSBI_VITVI	7.187e-14	100.00	Photosystem II reaction center protein I OS=Vitis ...	[more]
PSBI_TOBAC	7.187e-14	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_SPIOL	7.187e-14	100.00	Photosystem II reaction center protein I OS=Spinac...	[more]
PSBI_SOYBN	7.187e-14	100.00	Photosystem II reaction center protein I OS=Glycin...	[more]
PSBI_SORBI	7.187e-14	100.00	Photosystem II reaction center protein I OS=Sorghu...	[more]
PSBI_SOLTU	7.187e-14	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLLC	7.187e-14	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLBU	7.187e-14	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SINAL	7.187e-14	100.00	Photosystem II reaction center protein I OS=Sinapi...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004517_A05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936870 ID=CK936870; Name=CK936870; organism=Citrus sinensis; type=EST; length=419bp
GGGGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGATT
GTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTGGTGATATTCTTT
GTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCC
CGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAA
CGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAG
TGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGA
AAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGC
AATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA