CK936869

Overview
NameCK936869
Unique NameCK936869
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1977 contig Csv1_Contig1977:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936869 vs. ExPASy Swiss-Prot
Match: WSS1_YEAST (DNA damage response protein WSS1 OS=Saccharomyces cerevisiae GN=WSS1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.816e-25
Identity = 71/207 (34.30%), Postives = 107/207 (51.69%), Query Frame = 1
Query:   61 KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPXXXXXXXXXXXXENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDV 681
            K  ++DA  +++++A +V  +M+++ +KV  L EF P +  LLG+N+  G+++ LRLR    E+ F P E I+ TMLHEL HN +GPH+  FY   DE+      +  +G+  T  G    G+RLGG +                    + G  +  G     G SSI    SP + AA AAERR  DD WCG    N D  + +++
Sbjct:   38 KPNKEDALNLIKEIAHKVSYLMKENHFKVTNLVEFYPRDQRLLGMNVNHGSKIMLRLRCSTDEFQFLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWVIEQRGLYDTFLG---NGQRLGGRANLRSNRYPMTGISTNTGIVRKRGKGVKLGSLHPEGISSIDRGNSPRELAAFAAERRYRDDRWCGETKNNKDQIISDNI 241          
BLAST of CK936869 vs. ExPASy Swiss-Prot
Match: YQ77_SCHPO (Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe GN=SPCC1442.07c PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   70 EDDARQILEKVAKQ--VQPIMRKHKWKVRILSEFCPA-----NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGT 402
            +D A + LE++     ++ IM  H+W V +LSE  PA     +   LG+N   GA ++LRLR  +R   F  Y+ +  T++HEL HN +G H++ F++L+ ++ KE D     G  G+
Sbjct:  122 KDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELRLRT-DRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGS 238          
BLAST of CK936869 vs. ExPASy Swiss-Prot
Match: WSS1_SCHPO (DNA damage response protein wss1 OS=Schizosaccharomyces pombe GN=wss1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 42/125 (33.60%), Postives = 61/125 (48.80%), Query Frame = 1
Query:   34 KVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGK 408
            K+  + A+K    D +   L+++A    PIM++H + V  L E    N    G N   G  ++L LR  +  W   P+E ++D  LHELCH   GPH+  F+     +R     L AKG  G GK
Sbjct:   34 KIGFISAIKGDFHDLSSDYLKRIAAMAFPIMKEHGFGVTSLDEVA-YNAKFWGRNWNKGECIELVLRDASNRW--LPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALIALYAKGYKGPGK 155          
The following BLAST results are available for this feature:
BLAST of CK936869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WSS1_YEAST1.816e-2534.30DNA damage response protein WSS1 OS=Saccharomyces ... [more]
YQ77_SCHPO1.949e-1134.75Ubiquitin and WLM domain-containing protein C1442.... [more]
WSS1_SCHPO5.671e-1133.60DNA damage response protein wss1 OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_A04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936869 ID=CK936869; Name=CK936869; organism=Citrus sinensis; type=EST; length=756bp
GGGGATCTCCAGATGGATCTTAATGATCTTAACAAGGTTTGGGAGGTTAA
GGCTCTCAAGAAGATTGGAGAAGATGATGCAAGACAAATTCTTGAAAAAG
TGGCAAAACAAGTACAGCCAATCATGCGTAAACATAAATGGAAAGTCAGA
ATTCTTTCTGAGTTCTGTCCTGCAAATCCATCTCTTCTGGGGATAAACAT
AGGAGGAGGTGCAGAGGTCAAACTGAGGCTCCGGAGGCCAAACAGAGAGT
GGGATTTCTTTCCTTATGAACAGATTCTCGACACTATGCTGCATGAGCTC
TGCCACAATGAATATGGCCCTCATAATGCTGACTTTTATAAACTTTGGGA
TGAAATCAGAAAGGAATGTGATGAACTGATGGCTAAAGGAATTACTGGCA
CTGGGAAAGGATTTGATCTTCCTGGGAGACGATTGGGTGGGTTCTCCCGC
CAACCCCCATTGTCACAATTGCGCCAGTCTGCCCTTGCTGCTGCAGAGAA
CAGAGCCCGCCATGGAGCTCTTTTGCCATCAGGACCTAACCGTATAGGTG
GTGATAGCAGCATCAAAGCTGCACTCAGCCCAATACAAGCAGCTGCTATG
GCTGCTGAAAGGAGACTGCATGATGATATGTGGTGTGGGTCCAAATCTTT
GAACAGTGACATTGACGTGAGGGAAGATGTTGGATCTTCTACTGATGCTT
CAGAAAGTTCGAAGACTTCTTCAGTTTCTAATAACAGATCTGGCCAAACA
TCATCT
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