CK936866

Overview
NameCK936866
Unique NameCK936866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:3785..4632. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CITSI (Cytochrome b6 OS=Citrus sinensis GN=petB PE=3 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 3.735e-102
Identity = 181/183 (98.91%), Postives = 183/183 (100.00%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_EUCGG (Cytochrome b6 OS=Eucalyptus globulus subsp. globulus GN=petB PE=3 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 5.394e-101
Identity = 179/183 (97.81%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_MORIN (Cytochrome b6 OS=Morus indica GN=petB PE=3 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 7.045e-101
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++K+YDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKIYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTETNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SORBI (Cytochrome b6 OS=Sorghum bicolor GN=petB PE=3 SV=2)

HSP 1 Score: 366.311 bits (939), Expect = 1.202e-100
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SOLTU (Cytochrome b6 OS=Solanum tuberosum GN=petB PE=3 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.202e-100
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SOLLC (Cytochrome b6 OS=Solanum lycopersicum GN=petB PE=3 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.202e-100
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SOLBU (Cytochrome b6 OS=Solanum bulbocastanum GN=petB PE=3 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.202e-100
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SACOF (Cytochrome b6 OS=Saccharum officinarum GN=petB PE=3 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.202e-100
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SACHY (Cytochrome b6 OS=Saccharum hybrid GN=petB PE=3 SV=2)

HSP 1 Score: 366.311 bits (939), Expect = 1.202e-100
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_OENEH (Cytochrome b6 OS=Oenothera elata subsp. hookeri GN=petB PE=3 SV=2)

HSP 1 Score: 366.311 bits (939), Expect = 1.202e-100
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRF 183
The following BLAST results are available for this feature:
BLAST of CK936866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_CITSI3.735e-10298.91Cytochrome b6 OS=Citrus sinensis GN=petB PE=3 SV=2[more]
CYB6_EUCGG5.394e-10197.81Cytochrome b6 OS=Eucalyptus globulus subsp. globul... [more]
CYB6_MORIN7.045e-10197.27Cytochrome b6 OS=Morus indica GN=petB PE=3 SV=1[more]
CYB6_SORBI1.202e-10097.27Cytochrome b6 OS=Sorghum bicolor GN=petB PE=3 SV=2[more]
CYB6_SOLTU1.202e-10097.27Cytochrome b6 OS=Solanum tuberosum GN=petB PE=3 SV... [more]
CYB6_SOLLC1.202e-10097.27Cytochrome b6 OS=Solanum lycopersicum GN=petB PE=3... [more]
CYB6_SOLBU1.202e-10097.27Cytochrome b6 OS=Solanum bulbocastanum GN=petB PE=... [more]
CYB6_SACOF1.202e-10097.27Cytochrome b6 OS=Saccharum officinarum GN=petB PE=... [more]
CYB6_SACHY1.202e-10097.27Cytochrome b6 OS=Saccharum hybrid GN=petB PE=3 SV=... [more]
CYB6_OENEH1.202e-10097.27Cytochrome b6 OS=Oenothera elata subsp. hookeri GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_B11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936866 ID=CK936866; Name=CK936866; organism=Citrus sinensis; type=EST; length=848bp
GCGGGACTCAAANNNACAAATCAAAGAAAATGNNNTAGGTAAATAGAAGA
TTCAAGAGGCCTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATT
TTTTGGCATTCTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTC
TTTCGTATTTTTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATT
TTCTATTCCATACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATG
AAATTCTCATATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCT
CAATAAAGTCTACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTG
CAGATGATATAACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTAT
TGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGG
GTTTGCTATGACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCT
CTGTTCAATACATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCG
GTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGT
ATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTT
GGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACA
GGTTATTCTTTACCTTGGGACCAAATTGGATATTGGGCAGTAAAAATTGT
AACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCGCCTTTGGTAGAGT
TATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTTGACTCGTTTTT
back to top