CK936863

Overview
NameCK936863
Unique NameCK936863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:221..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK936863 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 1 
Query:   61 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVIEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 423
            +L+KLWDD+VAGPQP+RGLG LRK+   PL + + GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK936863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.406e-2752.89Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004517_B08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936863 ID=CK936863; Name=CK936863; organism=Citrus sinensis; type=EST; length=864bp
GCGGGGACTGAAGAAGAGGTTAAAGATTTAGNNNCTAGCAGCTAAATTGT
AAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTC
AGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTA
GCAGTCATAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAG
GTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGC
CGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTT
CACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGA
CAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTG
GGGAGACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGA
TGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGT
CTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTT
TTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTT
AAAATGCTGCTGACTAAAAGTAAACTAAAGACTGTGATGTTTTTATATCA
TATAATTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGA
GATGAAAGGTTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATT
TTGTAAGAGCCAAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATAT
GTTTTATTATTAATAAATAAGTTGCTTCTCTGAAAAAAAAAAAAAAAAAA
AAAAGAAAAAAAAA
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