CK936796

Overview
NameCK936796
Unique NameCK936796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13099 contig Csv1_Contig13099:51..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 4.815e-74
Identity = 140/171 (81.87%), Postives = 156/171 (91.23%), Query Frame = 3
Query:  258 ASRRLGFSAA-DPLLTCHVASRLSSIKTKGTRAVVPMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            ++RRLGFSA  D   + HVAS++ S++ KG R V+ MAKKSVG+L+  DLKGKKVFVRADLNVPLDDNQNITDDTRIRAA+PTIK LI+NGAKVILS+HLGRPKGVTPKFSLAPLVPRLSELLGI+VVKADDCIGPEVE LVASLPEGGVLLLENVRFYKEEEKN+P+FAK
Sbjct:   38 SARRLGFSAVVDSRFSVHVASKVHSVRGKGARGVITMAKKSVGDLNSVDLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKFLIENGAKVILSTHLGRPKGVTPKFSLAPLVPRLSELLGIEVVKADDCIGPEVETLVASLPEGGVLLLENVRFYKEEEKNEPDFAK 208          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.390e-73
Identity = 144/172 (83.72%), Postives = 156/172 (90.70%), Query Frame = 3
Query:  264 RRLGFS--AADPLLTCHVASRLSSIKT--KGTRAVVPMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            RRLGF+  AAD L T HVA++L S+K+  K  R V  MAKKSVG+L+ A+LKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHL+ NGAKVILSSHLGRPKGVTPK+SLAPLVPRLSELLGIQVVK +DCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKN+PEFAK
Sbjct:   39 RRLGFAGAAADSLFTNHVATKLRSLKSSSKPIRGVASMAKKSVGDLTAAELKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLMANGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVKVEDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNEPEFAK 210          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 3.230e-70
Identity = 134/157 (85.35%), Postives = 145/157 (92.36%), Query Frame = 3
Query:  306 HVASRLSSIKTKGT---RAVVPMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            HV S+++S K++ T   R V  MAKKSVG+L+ ADLKGKKVFVRADLNVPLDD+QNITDDTRIRAA+PTIKHLI NGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLG+QVVKADDCIGP+VEKLVA LPEGGVLLLENVRFYKEEEKNDPEFAK
Sbjct:    7 HVLSKINSYKSQSTKPIRGVASMAKKSVGDLTSADLKGKKVFVRADLNVPLDDSQNITDDTRIRAAIPTIKHLINNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGLQVVKADDCIGPDVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAK 163          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.500e-67
Identity = 134/171 (78.36%), Postives = 148/171 (86.55%), Query Frame = 3
Query:  261 SRRLGFSA-ADPLLTCHVASRLSSIKT-KGTRAVVPMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            +R L F+A ADP L  HVASR  +    +GTRAV  MAKKSVG+L+ ADL+GK+V VRADLNVPLDDNQNITDDTRIRAA+PTIK+L+ NGAKVIL+SHLGRPKGVTPKFSLAPLVPRLSELLGI+V KA+D IGPEVEKLVA L  G VLLLENVRFYKEEEKNDPEFAK
Sbjct:   37 ARSLAFAAGADPRLAVHVASRCRAASAARGTRAVATMAKKSVGDLTAADLEGKRVLVRADLNVPLDDNQNITDDTRIRAAIPTIKYLLSNGAKVILTSHLGRPKGVTPKFSLAPLVPRLSELLGIEVKKAEDVIGPEVEKLVADLANGAVLLLENVRFYKEEEKNDPEFAK 207          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.348e-57
Identity = 110/133 (82.71%), Postives = 121/133 (90.98%), Query Frame = 3
Query:  369 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            K+SVG L  ADLKGKKVFVRADLNVPLDD Q ITDDTRIRA++PTIK+L++ GAKVIL+SHLGRPKGVTPKFSL PLV RLSELLG++VV A DCIG EVEKL A+LP+GGVLLLENVRFYKEEEKNDPEFAK
Sbjct:    4 KRSVGTLGEADLKGKKVFVRADLNVPLDDAQKITDDTRIRASIPTIKYLLEKGAKVILASHLGRPKGVTPKFSLKPLVARLSELLGLEVVMAPDCIGEEVEKLAAALPDGGVLLLENVRFYKEEEKNDPEFAK 136          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.032e-56
Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = 3
Query:  369 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            KKSVG L  ADLKGK+VFVR DLNVPLD+N NITDDTRIRAAVPTIK+L+Q+G+ VIL+SHLGRPKGVTPK+SL PLVPRLSELLG++V  A+D IGPEVEKLVA +PEGGVLLLENVRFYKEEEKN+PEFAK
Sbjct:    4 KKSVGSLKEADLKGKRVFVRVDLNVPLDENFNITDDTRIRAAVPTIKYLMQHGSHVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDSIGPEVEKLVAEIPEGGVLLLENVRFYKEEEKNEPEFAK 136          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.406e-49
Identity = 114/180 (63.33%), Postives = 134/180 (74.44%), Query Frame = 3
Query:  243 RMPTSASRRLGFSA-ADPLLTCHVASRLS-SIKTKG-TRAVVPMAKKSVGELSGADLKGKKVFVRADLNVPLDDNQ-NITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            R+   A R + FS+ A P+L    A  +S  I+  G +R VV   KKSVG+L  ADL+GK+VFVRADLNVPLD     ITDDTRIRAAVPT+K+L+ NGAKV+L+SHLGRPKG    K+ L P+V RLSELLG +V K DDCIGP VE+ VASL  G +LLLENVRFYKEEEKNDPEFAK
Sbjct:   18 RVAAVAPRVVPFSSVARPVLRSTFAPEVSIDIRRAGRSRIVVEAVKKSVGDLGKADLEGKRVFVRADLNVPLDKKTLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKEVKKVDDCIGPSVEQAVASLKSGELLLLENVRFYKEEEKNDPEFAK 197          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.907e-46
Identity = 98/141 (69.50%), Postives = 113/141 (80.14%), Query Frame = 3
Query:  351 AVVPMAKKSVGELSGADLKGKKVFVRADLNVPLDD-NQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            +VV   KKSVG+L  ADL+GK+VFVRADLNVPLD     ITDDTRIRAAVPT+K+L+ NGAKV+L+SHLGRPKG    K+ L P+V RLSELLG  V K DDCIGPEVEK V ++  G +LLLEN RFYKEEEKN+PEFAK
Sbjct:   56 SVVEAVKKSVGDLHKADLEGKRVFVRADLNVPLDKATLAITDDTRIRAAVPTLKYLLDNGAKVLLTSHLGRPKGGPEDKYRLTPVVARLSELLGKPVTKVDDCIGPEVEKAVGAMKNGELLLLENCRFYKEEEKNEPEFAK 196          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.614e-45
Identity = 94/135 (69.63%), Postives = 104/135 (77.04%), Query Frame = 3
Query:  363 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            M+KK+V  LS AD+ GK+  VR D NVPLDD  NITDDTRIRAA+PTI+ L Q GAKVIL+SH GRPKGV  K  L P+  RLSELLG +VVK DD IG EV   VA+L  G VLLLENVRFYKEEEKNDPEFAK
Sbjct:    1 MSKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVVKTDDSIGDEVAAKVAALQNGQVLLLENVRFYKEEEKNDPEFAK 135          
BLAST of CK936796 vs. ExPASy Swiss-Prot
Match: PGK_ANASP (Phosphoglycerate kinase OS=Anabaena sp. (strain PCC 7120) GN=pgk PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.108e-45
Identity = 93/135 (68.89%), Postives = 104/135 (77.04%), Query Frame = 3
Query:  363 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKEEEKNDPEFAK 767
            M+KK+V  LS AD+ GK+  VR D NVPLDD  NITDDTRIRAA+PTI+ L Q GAKVIL+SH GRPKGV  K  L P+  RLSELLG +V+K DD IG EV   VA+L  G VLLLENVRFYKEEEKNDPEFAK
Sbjct:    1 MSKKTVASLSAADISGKRALVRVDFNVPLDDQGNITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDEKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVATLQNGQVLLLENVRFYKEEEKNDPEFAK 135          
The following BLAST results are available for this feature:
BLAST of CK936796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKH_ARATH4.815e-7481.87Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGKH_TOBAC2.390e-7383.72Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_SPIOL3.230e-7085.35Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_WHEAT1.500e-6778.36Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKY_WHEAT5.348e-5782.71Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKY_TOBAC2.032e-5681.95Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_VOLCA2.406e-4963.33Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGKH_CHLRE1.907e-4669.50Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_ANAVT1.614e-4569.63Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGK_ANASP2.108e-4568.89Phosphoglycerate kinase OS=Anabaena sp. (strain PC... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_H08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936796 ID=CK936796; Name=CK936796; organism=Citrus sinensis; type=EST; length=767bp
GGGGGCTCTTCACGTCCACATCTTCTTCATCTTCCCCACACATTTTCCTT
CCCCATTCTTCAATCAAACCAAAACCCACTTCCCATTTCTCCACTTTGTC
GACAAAGTTTCAATCTTTTGCGCCTTTACTACGCCACTCCACTCCCACCA
CATCAATGGCTTCAGCCACCGCTCCCACTACTTTATCTCTCGTCAAAACC
GCCGCAAGTTCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCC
CACTTCAGCATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGA
CCTGCCATGTGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGT
GCGGTGGTGCCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGA
TTTGAAAGGGAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGG
ATGATAATCAGAACATTACTGACGATACTAGAATCAGAGCTGCTGTTCCC
ACCATCAAGCATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCA
CTTGGGAAGACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTG
TGCCTCGTCTTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGAC
TGCATTGGTCCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAGGCGG
TGTTCTTCTTCTTGAAAACGTGAGGTTCTACAAAGAGGAGGAAAAAAACG
ATCCTGAGTTTGCCAAG
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