CK936789

Overview
NameCK936789
Unique NameCK936789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1637 contig Csv1_Contig1637:357..683. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
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BLAST of CK936789 vs. ExPASy Swiss-Prot
Match: RR6_ARATH (30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.002e-49
Identity = 93/106 (87.74%), Postives = 97/106 (91.51%), Query Frame = 2 
Query:    8 PGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALE 325
            P   G +TA+EDK EPQCPPGLRQYETM VLRPDMSEDERL LTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRK+NKAGE+NTYLDGIYLLFTYFTKPESI  LE
Sbjct:   79 PSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLE 184
[Close]
BLAST of CK936789 vs. ExPASy Swiss-Prot
Match: RR6_SPIOL (30S ribosomal protein S6 alpha, chloroplastic (Fragment) OS=Spinacia oleracea GN=RPS6 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.236e-45
Identity = 86/107 (80.37%), Postives = 94/107 (87.85%), Query Frame = 2 
Query:    5 PPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALE 325
            PP +     A+E+K EPQCPPGLRQYETM VLRPDM+EDERL LTQKYEELLVAGG MYVEVFNRGVIPLAYSI+++NKAGE+N YLDGIYLLFTYFTKPESI  LE
Sbjct:   40 PPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLE 146
The following BLAST results are available for this feature:
BLAST of CK936789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RR6_ARATH7.002e-4987.7430S ribosomal protein S6 alpha, chloroplastic OS=A... [more]
RR6_SPIOL1.236e-4580.3730S ribosomal protein S6 alpha, chloroplastic (Fra... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004518_A12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IF_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936789 ID=CK936789; Name=CK936789; organism=Citrus sinensis; type=EST; length=327bp
AGTGCCACCCGGGTCGGTCGGAACCGCCACCGCTATCGAAGATAAAGAGG
AGCCACAGTGCCCACCTGGGTTAAGACAATACGAGACAATGATGGTCTTG
AGACCCGACATGTCCGAAGATGAAAGACTCGCTCTCACTCAGAAGTACGA
GGAGTTGCTTGTTGCTGGGGGTGGCATGTATGTGGAGGTATTCAATAGAG
GGGTTATTCCATTGGCCTACAGCATCAGGAAGAGAAACAAAGCTGGGGAG
TCCAACACTTACTTGGATGGTATCTATCTCCTCTTCACCTACTTCACTAA
ACCAGAGTCAATAGAAGCTCTTGAGAG
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