CX043710

Overview
NameCX043710
Unique NameCX043710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9321 contig Csv1_Contig9321:42..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD8_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.554e-83
Identity = 159/257 (61.87%), Postives = 183/257 (71.21%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEE-----XXXXXXXXXXXXXXXXLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSVSFFA 772
            K+CFDC+AKNPTWASVTYGIFLCIDCSA HR+LGVHISFVRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGWTDGGKIEAKYTSRAA+LY+QILAKEVAK++AEE                     V      +E    + E   A  SPK S+TV+ ST KKP+GAK++GKTGGLGARKLT+KP ++LYEQKPEE                       FASRFEY D++QS   S GG QVL+HVAPPKS SFF+
Sbjct:   26 KVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVSSYSVKEELPLSKHEATSATSSPKASNTVVPSTFKKPIGAKRTGKTGGLGARKLTTKPKDNLYEQKPEEVAPVIPAVSSTNNGESKSSAGSSFASRFEYNDDLQSGGQSVGGTQVLNHVAPPKSSSFFS 282          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD10_ARATH (ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.688e-82
Identity = 165/253 (65.22%), Postives = 185/253 (73.12%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKE-NYQGRQETQD-APGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEXXXXXXXXXXXXXXXXLPFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSVSFF 769
            K+CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS+EQLKMM+YGGNNRAQVFFKQ+GW+DGGK EAKYTSRAA+LYKQILAKEVAKS AEE  L               L  +K  +A KE N   +QE  D  P SP++S      +VKKPLGAKK+GKTGGLGARKLT+K S +LY+QKPEE                  F+SRF+Y DNVQ+ E     PQV+SHVAPPKS  FF
Sbjct:   23 KICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMIYGGNNRAQVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAEEE-LDLPPSPPDSTQVPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRISR-----SVKKPLGAKKTGKTGGLGARKLTTKSSGTLYDQKPEESVIIQATSPVSAKSARSSFSSRFDYADNVQNRE-DYMSPQVVSHVAPPKSSGFF 268          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.950e-76
Identity = 153/253 (60.47%), Postives = 177/253 (69.96%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKPEEXXXXXXXXXXXXXXXXL--PFASRFEYVDNVQSSELSSGGPQVLSHVAPPKSVSFF 769
            K+CFDC+AKNPTWASV YGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS EQL+ M++GGNNRAQVFFKQHGW DGGKIEAKYTSRAA++Y+Q LAKEVAK+MAEE  L                 +    ++PKE+    ++      SPK S  V+ ST KKPL ++KSGKTGGLGARKLT+K  ++LYEQKPEE                    FASRFEY D+ QS      G +VLSHVAPPKS +FF
Sbjct:   23 KVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAADMYRQTLAKEVAKAMAEETVLPSLSSVATSQPVESS-ENGFTSESPKES--SLKQEAAVVSSPKASQKVVASTFKKPLVSRKSGKTGGLGARKLTTKSKDNLYEQKPEEPVPVIPAASPTNDTSAAGSSFASRFEYFDDEQSG--GQSGTRVLSHVAPPKSSNFF 270          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG2_HUMAN (ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.737e-31
Identity = 85/225 (37.78%), Postives = 115/225 (51.11%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMA----------------------EEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPG------SPKVSHTVLTSTV--KKPLGAKKS-GKTGGLGARKLTSKPSESLYEQ 595
            K CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS W+  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y++ + +  + ++A                      +++                  P    Q AP     G  + +  P       SPK S  + +S +  KKP  AKK  G   GLGA+K++S+    +  Q
Sbjct:   24 KACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWIDNMSSAVPNHSPEKKDSDFFTEHTQPPAWDAPATEPSGTQQPAPSTESSGLAQPEHGPNTDLLGTSPKASLELKSSIIGKKKPAAAKKGLGAKKGLGAQKVSSQSFSEIERQ 247          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG2_BOVIN (ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31
Identity = 88/224 (39.29%), Postives = 115/224 (51.34%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMA-------------------EEAGLXXXXXXXXXXXXXXXLPDVK--IQDAPKENYQGRQETQDAPG------SPKVSHTVLTSTV--KKPLGAKKS-GKTGGLGARKLTSKPSESLYEQ 595
            K CFDC AKNP+WAS+TYG+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF+QHG T       KY SRAA++Y++ + +  + ++A                   E+                  + D+    Q AP     G  + +  P       SPK S    TS +  KKP  AKK  G   GLGA+K++S+    +  Q
Sbjct:   24 KACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSTWSWFQLRCMQVGGNANATAFFRQHGCT-ANDANTKYNSRAAQMYREKIRQLGSAALARHGTDLWTDSVSTAPSHSPEKKESDFFLEHTQPPAWNAPVTDLSETQQPAPSAESSGLAQPEHGPNMDLLGTSPKASLEPKTSLIGKKKPAAAKKGLGAKKGLGAQKVSSQSFSEIERQ 246          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: YQP4_CAEEL (Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 79/200 (39.50%), Postives = 106/200 (53.00%), Query Frame = 2
Query:   11 PRKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLD-SWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQD----------APKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGA------KKSGKTGGLGARK 559
            P K+CFDC A+NPTW +VTYG+FLCIDCSAVHR+LGVH++FVRSTNLD +W+  QL+ M  GGN  A  FFK HG  +  + + KY SRAA++Y+  L+    ++  +                     D   QD             + Y    +++D+   P V H  L S+V  P  A      KK  K   LGA+K
Sbjct:   24 PNKLCFDCGARNPTWCTVTYGVFLCIDCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRAMQLGGNGNANQFFKAHG-CNTTEAQQKYKSRAAQMYRDKLSTLCQEAQRKFGTQLIIDTVTHAEEKPAEEEDFFAQDFGHTSASATSLSSDAYIADHKSEDSTHGPSVDH--LDSSVAVPTSAPVSVILKKPIKKATLGAKK 220          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.774e-29
Identity = 82/193 (42.49%), Postives = 103/193 (53.37%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTVLTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYE 592
            K+CFDC AKNP+WAS+TYG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG +      AKY SRAA+LY     +E  KS+A +A                 L        PKE     ++   +  SP+VS T   S + +P                LTS+P+E+  E
Sbjct:   23 KVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCST-NDTNAKYNSRAAQLY-----REKIKSLASQATRKHGTDLWLDSCVVPPL-----SPPPKE-----EDFFASHVSPEVSDTAWASAIAEP--------------SSLTSRPAETTLE 185          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEA 337
            K+CFDC AKNP+WAS+TYG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG  D     AKY SRAA+LY     +E  K++A +A
Sbjct:   23 KVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHG-CDTNDTNAKYNSRAAQLY-----RERIKALASQA 124          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 80/198 (40.40%), Postives = 106/198 (53.54%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEAGLXXXXXXXXXXXXXXXLPDVKIQDAPKENYQGRQETQDAPGSPKVSHTV--LTSTVKKPLGAKKSGKTGGLGARKLTSKPSESLYEQKP 601
            K CFDC AKNP+WAS+ YG+FLCIDCS VHRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG T      AKY SR+A++Y++ + +++A +   + G                  + K  D   E  Q     +  P S   S TV  +T T+  P  A  +    G     L++ P  ++ E KP
Sbjct:   24 KSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASANAFFHQHGATT-SDTNAKYNSRSAQMYREKI-RQLANAAMSKHGTDLWIDGMNCALVQP--AEKKESDFFAEMTQPSSSWEATPASEPTSTTVTTVTRTISSPETADSASAECGPSVDILSTSPKAAV-EVKP 216          
BLAST of CX043710 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.179e-29
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   17 KMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILAKEVAKSMAEEA 337
            K+CFDC AKNP+WAS+TYG+FLCIDCS  HRSLGVH+SF+RST LDS WS  QL+ M  GGN  A  FF QHG +      AKY SRAA+LY     +E  KS+A +A
Sbjct:   23 KVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNANASSFFHQHGCST-SDTNAKYNSRAAQLY-----REKIKSLASQA 124          
The following BLAST results are available for this feature:
BLAST of CX043710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
AGD8_ARATH2.554e-8361.87Probable ADP-ribosylation factor GTPase-activating... [more]
AGD10_ARATH3.688e-8265.22ADP-ribosylation factor GTPase-activating protein ... [more]
AGD9_ARATH3.950e-7660.47Probable ADP-ribosylation factor GTPase-activating... [more]
ARFG2_HUMAN1.737e-3137.78ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_BOVIN2.269e-3139.29ADP-ribosylation factor GTPase-activating protein ... [more]
YQP4_CAEEL2.124e-2939.50Uncharacterized protein F07F6.4 OS=Caenorhabditis ... [more]
ARFG3_PONAB2.774e-2942.49ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_BOVIN4.731e-2960.19ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG2_XENTR4.731e-2940.40ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA6.179e-2960.19ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_13A01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-13A01-B1-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043710 ID=CX043710; Name=CX043710; organism=Citrus sinensis; type=EST; length=773bp
GTTCCATGCACCTCGTAAGATGTGTTTTGATTGTAATGCTAAGAACCCGA
CGTGGGCCTCGGTGACTTACGGGATCTTTCTCTGCATCGATTGCTCTGCC
GTTCACCGTAGTCTCGGTGTCCACATCAGCTTCGTTAGGTCAACAAATTT
AGACTCATGGAGTGCTGAGCAGTTGAAAATGATGGTGTATGGAGGAAACA
ACCGTGCACAAGTTTTCTTTAAGCAGCATGGATGGACAGATGGAGGCAAA
ATTGAGGCTAAGTATACCTCAAGAGCTGCTGAATTATACAAGCAGATTCT
TGCGAAAGAAGTTGCTAAAAGTATGGCAGAAGAGGCAGGCTTGCCATCAT
CACCTGTTGCCTCGCAGCCGGCACAAGCAGCTAATGCACTTCCAGATGTT
AAGATCCAGGATGCTCCTAAAGAAAATTATCAAGGAAGGCAAGAAACTCA
AGACGCTCCTGGTTCGCCAAAAGTTTCTCATACAGTTCTTACTAGTACCG
TCAAAAAACCACTTGGTGCAAAGAAATCAGGGAAGACTGGGGGTCTAGGT
GCCCGAAAGCTGACTTCAAAGCCAAGTGAAAGTCTATATGAGCAGAAGCC
TGAAGAACCTTCTGTCCCTATTTCTTCCTCAACCAGCAACACATCGTCAG
TTAGTTTGCCCTTTGCTTCTCGCTTTGAGTATGTGGATAATGTCCAATCT
TCCGAGTTGAGTTCTGGTGGTCCACAAGTGCTTAGCCATGTAGCTCCACC
AAAGTCCGTCAGCTTCTTTGCTG
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