FC921756

Overview
NameFC921756
Unique NameFC921756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length146
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:595..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921756 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.069e-12
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1
Query:    1 PVLIPVVTEKGKGYPPAEAAADRMHGVVQFHPKTGKQFKTKSPTLSYT 144
            PVLI VVTEKG+GYP AE AAD+ HGV +F P TGKQFK+ + TLSYT
Sbjct:  351 PVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYT 398          
BLAST of FC921756 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.927e-12
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 PVLIPVVTEKGKGYPPAEAAADRMHGVVQFHPKTGKQFKTKSPTLSYT 144
            PVLI VVTEKG+GYP AE A D+ HGVV+F P TG+QFKT + T SYT
Sbjct:  355 PVLIHVVTEKGRGYPYAERADDKYHGVVKFDPATGRQFKTTNKTQSYT 402          
BLAST of FC921756 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.047e-12
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 PVLIPVVTEKGKGYPPAEAAADRMHGVVQFHPKTGKQFKTKSPTLSYT 144
            PVLI VVTEKG+GYP AE AAD+ HGV +F P TGKQFK  + T SYT
Sbjct:  354 PVLIHVVTEKGRGYPYAERAADKYHGVAKFDPATGKQFKGSAKTQSYT 401          
BLAST of FC921756 vs. ExPASy Swiss-Prot
Match: DXS_AZOC5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dxs PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.490e-11
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 PVLIPVVTEKGKGYPPAEAAADRMHGVVQFHPKTGKQFKTKSPTLSYT 144
            P+L+ VVT+KGKGYPPAEA+AD+ HGVV+F   TG Q K KS   SYT
Sbjct:  275 PILVHVVTQKGKGYPPAEASADKYHGVVKFDVVTGAQVKAKSNAPSYT 322          
The following BLAST results are available for this feature:
BLAST of FC921756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DXS_ORYSJ1.069e-1270.83Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH6.927e-1268.75Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN9.047e-1268.75Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_AZOC54.490e-1164.581-deoxy-D-xylulose-5-phosphate synthase OS=Azorhiz... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06052A03T7 RindPdigS Citrus sinensis cDNA clone C06052A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921756 ID=FC921756; Name=FC921756; organism=Citrus sinensis; type=EST; length=146bp
CCAGTTCTGATCCCCGTTGTAACCGAGAAGGGAAAGGGCTATCCCCCCGC
GGAGGCCGCAGCTGATAGAATGCATGGAGTTGTCCAGTTCCATCCCAAAA
CTGGCAAGCAATTTAAGACCAAATCCCCTACGCTCTCGTATACACA
back to top