CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.492e-47
Identity = 88/94 (93.62%), Postives = 90/94 (95.74%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTP YSYSAANK  AVIWEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct:   18 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_PHAAU (Cytochrome c OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.892e-46
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYS ANK MAVIWEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA
Sbjct:   18 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC3_ARATH (Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.471e-46
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F+TKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTP YSYSAANK MAV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct:   19 FRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SESIN (Cytochrome c OS=Sesamum indicum PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTP YSYSAANK MAVIW E TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLKE+TA
Sbjct:   18 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVIWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ABUTH (Cytochrome c OS=Abutilon theophrasti PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTP YSYSAANK MAV W E TLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:   18 FKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ORYSJ (Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.732e-45
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTP YSYS ANK MAVIWEE TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct:   19 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ORYSI (Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.732e-45
Identity = 84/94 (89.36%), Postives = 89/94 (94.68%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTTP YSYS ANK MAVIWEE TLY+YLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLKE+T+
Sbjct:   19 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_SAMNI (Cytochrome c OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKC QCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK MAV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:   18 FKTKCNQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CANSA (Cytochrome c OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCA+CHTV +GAGHKQGPNLNGLFGRQSGTT  YSYSAANK MAV W++KTLY+YLLNPKKYIPGTKMVFPGLKKP++RADLIAYLKESTA
Sbjct:   18 FKTKCAECHTVGRGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVTWZZKTLYDYLLNPKKYIPGTKMVFPGLKKPZBRADLIAYLKESTA 111
[Close]
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.660e-45
Identity = 86/94 (91.49%), Postives = 88/94 (93.62%), Query Frame = 2 
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            FKTKCAQCHTV KGAGHKQGPNLNGLFGRQSGTT  YSYSAANK  AV WEEKTLY+YLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct:   18 FKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_CUCMA8.492e-4793.62Cytochrome c OS=Cucurbita maxima PE=1 SV=1[more]
CYC_PHAAU1.892e-4693.62Cytochrome c OS=Phaseolus aureus PE=1 SV=1[more]
CYC3_ARATH2.471e-4692.55Probable cytochrome c At4g10040 OS=Arabidopsis tha... [more]
CYC_SESIN1.226e-4591.49Cytochrome c OS=Sesamum indicum PE=1 SV=1[more]
CYC_ABUTH1.226e-4591.49Cytochrome c OS=Abutilon theophrasti PE=1 SV=1[more]
CYC_ORYSJ2.732e-4589.36Cytochrome c OS=Oryza sativa subsp. japonica GN=CC... [more]
CYC_ORYSI2.732e-4589.36Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1... [more]
CYC_SAMNI4.660e-4591.49Cytochrome c OS=Sambucus nigra PE=1 SV=1[more]
CYC_CANSA4.660e-4587.23Cytochrome c OS=Cannabis sativa PE=1 SV=1[more]
CYC_BRAOL4.660e-4591.49Cytochrome c OS=Brassica oleracea PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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