CK936477

Overview
NameCK936477
Unique NameCK936477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936477 vs. ExPASy Swiss-Prot
Match: CHMU_ARATH (Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 7.040e-46
Identity = 91/157 (57.96%), Postives = 111/157 (70.70%), Query Frame = 3
Query:    9 SINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLG--------NDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD 455
            SIN NK IW+MYF  L+P  V +GDDGNY STA  D  CLQ LS+RIHYGKFVAE KF+ +P  YE AI+A+D+DALM++LT+  VE  +KKRVE K    GQEV +G         +G++   +K+ P +V  LYGDWIMP TK VQVEYLLRRLD
Sbjct:  178 SININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 334          
BLAST of CK936477 vs. ExPASy Swiss-Prot
Match: CHMU_SCHPO (Probable chorismate mutase OS=Schizosaccharomyces pombe GN=SPAC16E8.04c PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.910e-23
Identity = 59/149 (39.60%), Postives = 91/149 (61.07%), Query Frame = 3
Query:    9 SINKNKIIWDMYFNQLLPLFVAEGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRL 452
            ++N N  I + Y N+++P   + GDD  NY ST   D+ CLQ+LSRRIHYGKFVAE K+   P +Y+  I A+D   + N +     E+ V KR+  KA+  G++ +   D  K +  +++   V+ +Y D+++P TK V+V+YLL RL
Sbjct:  106 NVNVNSEILEYYINEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILARDIKGIENEIVDAAQEERVLKRLHYKALNYGRDAA---DPTKPSD-RINADCVASIYKDYVIPMTKKVEVDYLLARL 250          
BLAST of CK936477 vs. ExPASy Swiss-Prot
Match: CHMU_YEAST (Chorismate mutase OS=Saccharomyces cerevisiae GN=ARO7 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.412e-23
Identity = 59/150 (39.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:   12 INKNKIIWDMYFNQLLPLFVA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD 455
            +N N  I  +Y  +++PL    +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M  +T   VE+ + +R+ KKA V G + +     ++    ++ P  + ++Y + ++P TK V+VEYLLRRL+
Sbjct:  111 VNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPT-----NESGERRITPEYLVKIYKEIVIPITKEVEVEYLLRRLE 255          
The following BLAST results are available for this feature:
BLAST of CK936477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CHMU_ARATH7.040e-4657.96Chorismate mutase, chloroplastic OS=Arabidopsis th... [more]
CHMU_SCHPO4.910e-2339.60Probable chorismate mutase OS=Schizosaccharomyces ... [more]
CHMU_YEAST6.412e-2339.33Chorismate mutase OS=Saccharomyces cerevisiae GN=A... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004521_H12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936477 ID=CK936477; Name=CK936477; organism=Citrus sinensis; type=EST; length=571bp
GGGGGACTTCGATCAACAAAAATAAGATCATATGGGATATGTACTTCAAC
CAATTGCTTCCGCTTTTTGTTGCTGAGGGTGATGATGGCAACTATGCATC
AACTGCCACTAGCGATCTTGCCTGTCTACAGGCTCTCTCTAGAAGGATAC
ATTATGGGAAATTCGTAGCCGAGGTTAAATTCAGGGATGCCCCACATGAA
TATGAACTTGCAATTCGTGCTAAGGACAGAGATGCTCTGATGAATCTATT
AACATATGAGAATGTAGAACAGATGGTGAAGAAGAGAGTTGAGAAGAAGG
CGATGGTACTCGGGCAAGAAGTGAGCCTCGGCAATGACGGCGACAAGCAA
GCGAGGTTCAAAGTGGATCCATCTGTAGTTTCAAGACTCTATGGAGATTG
GATCATGCCCTTTACCAAGCTCGTTCAAGTTGAGTACCTCCTTCGCCGCT
TGGATTGAAGTTGAAACCTGTGCTAGCTATTGTCTTAGACCCGTCACATT
TTCTCCATGATCTAGTAATAAACAATATTTCATTTTAAATCTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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