CN186671

Overview
NameCN186671
Unique NameCN186671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186671_ssr371 microsatellite CN186671_ssr371:371..382. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186671_ssr459 microsatellite CN186671_ssr459:459..470. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13772 contig Csv1_Contig13772:19..566. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186671 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.047e-24
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 3
Query:  150 ARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 308
            ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   52 ARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of CN186671 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 3
Query:  117 AKELVIQNHQLARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 308
            AK++   +  +ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   35 AKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CN186671 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.120e-19
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  153 RCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 308
            RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   48 RCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CN186671 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  153 RCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 308
            RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   48 RCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of CN186671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU4.047e-2483.02Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH2.221e-2268.75Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA2_ARATH5.120e-1971.15Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH6.686e-1973.08Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186671 ID=CN186671; Name=CN186671; organism=Citrus sinensis; type=EST; length=548bp
CGTCACTAAGCATAACTAATTGTAAGCCATGGCCATCTCCAAAGCTCTTA
TTGCTTCAGTCCTCCTCTCACTTGTTGTTTTTCATCTCGTTGAAGCTGAG
CATACGATTAACTCAAGCAAAGGAACTGGTTATCCAAAACCATCAATTGG
CCAGGTGCCGATTATCGTCGAGGCCAAACCTGTGCCACAGGGCATGTGGT
ACCTGCTGCGCCCGCTGCAATTGTGTTCCTCCAGGCACTGCAGGCAACAC
TGAGGTCTGCCCTTGCTACGCCAATATGACCACCCACCACGGCAGACGCA
AGTGCCCTTGAAATATTTTAAGTTGAAACGACGTCGTCTACTTCTTAATT
AATTTTTTTGGAGCTTCTATTCTCTCTCTCTCTATGTATAAATATGTGCG
TGTGCGTGTGCGTGTGTTGCCTGTGGCCAGAAAAACAGAGTTGATCCATA
TTCCCATGAATAAATAAATAAATCCATTTCATGTTACTTATTGTGGATAC
ATAAGTTTCCAGAGAATAATAATAAGAGGCTTCTTCTCCTTTTAAATT
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