CN186662

Overview
NameCN186662
Unique NameCN186662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2558 contig Csv1_Contig2558:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.971e-45
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            V+L DVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQF F+RR+NVLLSI++DKTDEA+LQ A++NASRLL E  T V EYTSYA+TKTIPGHYVIYWEL
Sbjct:  386 VELADVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRENVLLSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSYADTKTIPGHYVIYWEL 490          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.602e-44
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 3
Query:  243 KSQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            KS+ V+L DVEVGKEYELVITTYAGL RYRVGDIL+VTGF+NSAPQF FVRRKNVLLSI++DKTDEAELQ+A++NAS LL E  T V EYTSYA TKTIPGHYVIYWEL
Sbjct:  381 KSELVELADVEVGKEYELVITTYAGLNRYRVGDILQVTGFYNSAPQFKFVRRKNVLLSIESDKTDEAELQSAVENASLLLGEQGTRVIEYTSYAETKTIPGHYVIYWEL 489          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.602e-44
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            V+L +VEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQF F+RRKNVLLS+++DKTDEAELQ A++NASRL  E  T   EYTSYA TKTIPGHYVIYWEL
Sbjct:  392 VELANVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSVESDKTDEAELQKAVENASRLFAEQGTRGIEYTSYAETKTIPGHYVIYWEL 496          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.631e-43
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 3
Query:  246 SQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLL-REFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            ++ V+LVDV +GKEYELV+TTYAGL RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSID+DKTDE+ELQ A++NAS +L  E  + V EYTSYA+T TIPGHYV+YWEL
Sbjct:  375 TKAVELVDVNIGKEYELVVTTYAGLCRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASSILHEECGSRVAEYTSYADTSTIPGHYVLYWEL 483          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 3
Query:  246 SQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            +Q VDL  VEVG+EYELVITTYAGL RYRVGD+LRVTGFHN+APQF FVRRKNVLLSI++DKTDEAELQ A++ AS LLR    SV EYTS A TK IPGHYVIYWEL
Sbjct:  390 TQLVDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGASVVEYTSQACTKRIPGHYVIYWEL 497          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 3
Query:  246 SQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            +Q VDL  VEVG+EYELVITTYAGL RYRVGD+LRVTGFHN+APQF FVRRKNVLLSI++DKTDEAELQ A++ AS LLR    SV EYTS A TK IPGHYVIYWEL
Sbjct:  390 TQLVDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGASVVEYTSQACTKRIPGHYVIYWEL 497          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.291e-40
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            VDL D EVG+EYELVITTYAGL RYRVGDIL+VTGFHN+APQF FVRRKNVLLSID+DKTDEAELQ A++ AS LL  +  S+ EYTS A+  TIPGHYV+YWEL
Sbjct:  400 VDLADAEVGREYELVITTYAGLCRYRVGDILQVTGFHNAAPQFRFVRRKNVLLSIDSDKTDEAELQAAVERASALLSPYGASIVEYTSQADATTIPGHYVVYWEL 504          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 78/118 (66.10%), Postives = 97/118 (82.20%), Query Frame = 3
Query:  231 SLSAKSQP--VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELSLS 578
            +L+ K Q   VDLVDV++G+EYELV+TTYAGLYRYRVGD+L V GF N+APQF F+ RKNV+LSID+DKTDE ELQNA+ NA   L  F+ S+ EYTSYA+T +IPGHYV++WEL L+
Sbjct:  389 ALTEKEQQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLN 506          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 3
Query:  231 SLSAKSQP--VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELSL 575
            +L+ K Q   VDLVDV++G+EYELV+TTYAGL RYRVGD+LRVTGF N APQF F+ RKNV+LSID+DKTDE ELQNA+ NA   L  F+ S+ EYTSYA+T +IPGHYV++WEL L
Sbjct:  389 ALTEKEQQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCL 505          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 76/106 (71.70%), Postives = 88/106 (83.02%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNA-SRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            VDL  VEVG+EYE+VITTYAGL RYRVGD+LRVTGFHN+APQF FVRR++VLLS++ DKTDEAEL  A++ A S LLR    SV EYTS A T+ IPGHYV+YWEL
Sbjct:  224 VDLARVEVGREYEVVITTYAGLSRYRVGDVLRVTGFHNAAPQFRFVRRQSVLLSVELDKTDEAELHRAVERASSALLRPRGVSVAEYTSRACTERIPGHYVVYWEL 329          
The following BLAST results are available for this feature:
BLAST of CN186662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GH34_ARATH2.971e-4583.81Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH33_ARATH5.602e-4481.65Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH32_ARATH5.602e-4481.90Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]
GH31_ARATH3.631e-4377.06Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSJ3.399e-4177.78Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI3.399e-4177.78Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ORYSJ1.291e-4076.19Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH7.087e-3966.10Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH35_ARATH9.256e-3967.52Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH39_ORYSJ1.478e-3671.70Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186662 ID=CN186662; Name=CN186662; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTTTTTTTTGATTACACAGTCACGATTCTTTCTTCTTACCTAT
ATAACCGATTCTAAAATTCTACTTCGGCGAAAGTATACATTGCATCTCAA
CAATAATCTAAAAGGAAAAAGCTATTTCCCCCGATTTTAAACCCCGAATT
GCACCCCGAATTGAAACGCGCCGTTTTGGCAAATAAATAACGCACCGTTT
AACTTTGCGTTTAACCTTTGCTTTTGATGATCTCTTTCTGCAAAATCGCA
GCCTGTTGACCTTGTCGATGTCGAAGTGGGCAAAGAATACGAGCTTGTGA
TCACAACTTACGCCGGCTTGTACAGATACCGAGTCGGGGACATCCTCCGA
GTGACCGGGTTCCACAACTCAGCCCCGCAGTTCCATTTCGTCAGAAGAAA
GAACGTCTTACTCAGTATTGACGCCGACAAAACCGACGAGGCCGAACTGC
AGAACGCCATCGACAACGCTTCTCGACTGCTCCGAGAATTCAACACCAGC
GTCGGGGAATACACAAGCTATGCGAATACAAAGACAATCCCAGGTCACTA
CGTGATATACTGGGAACTCAGTCTCTCACACACCCGCAAAATCTCTTTCG
TTTAACCTTTGCTAGAGAATTTGATCCGAGTTTGGTTGCAAGAGATGATT
TTTGATGATTTTGGTTCTGTGAATGGCGCGATCCATCCT
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