CN186653

Overview
NameCN186653
Unique NameCN186653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_ORYSJ (60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.680e-48
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = -3
Query:  232 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQXXXXXXXXXXXXXXAQRLT 576
            AQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK+RLGSIVHKKTASVLCLTTVKNEDK+EFSKILEAIKANFNDK++E+RKKWGGG+MGSKSQ              AQR+T
Sbjct:  144 AQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT 258          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A1_ARATH (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.812e-47
Identity = 89/96 (92.71%), Postives = 94/96 (97.92%), Query Frame = -3
Query:  289 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 576
            AQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKSRLG++VH+KTAS LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  143 AQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 238          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A2_ARATH (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.502e-47
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = -3
Query:  289 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 576
            AQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKSRLG++VH+KTA+ LCLTTVKNEDK+EFSKILEAIKANFNDKYEE RKKWGGGIMGSKSQ
Sbjct:  142 AQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQ 237          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 66/95 (69.47%), Postives = 82/95 (86.32%), Query Frame = -3
Query:  292 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 576
            AQLVVIAHDVDP+ELV++LPALCRKM +PYCIVKGK+RLG +V +KT + L LTTV N DK  F K+LEA+K NFN+++EE+R+ WGGGI+GSKS
Sbjct:  157 AQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKS 251          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 4.091e-33
Identity = 63/95 (66.32%), Postives = 79/95 (83.16%), Query Frame = -3
Query:  292 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 576
            AQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG +VH+KT + +C T    ED+   +K++EAIK N+ND+YEE+R+ WGG IMG KS
Sbjct:  152 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKS 246          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_TAKRU (60S ribosomal protein L7a OS=Takifugu rubripes GN=rpl7a PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 9.115e-33
Identity = 63/95 (66.32%), Postives = 79/95 (83.16%), Query Frame = -3
Query:  292 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 576
            AQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG +VH+KT + +  T    EDK   +K++EAIK N+ND+YEE+R+ WGGGI+G KS
Sbjct:  152 AQLVVIAHDVDPIELVIFLPALCRKMGVPYCIVKGKARLGRLVHRKTCTSVAFTQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILGPKS 246          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.555e-32
Identity = 60/95 (63.16%), Postives = 80/95 (84.21%), Query Frame = -3
Query:  292 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 576
            AQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  152 AQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_ANOGA (60S ribosomal protein L7a OS=Anopheles gambiae GN=RpL7A PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.031e-32
Identity = 59/95 (62.11%), Postives = 82/95 (86.32%), Query Frame = -3
Query:  292 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 576
            AQLV+IAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG++V++KT + + LT V+N DK   +K++E IK NFND+++++R+ WGGG++G KS
Sbjct:  158 AQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTLVYRKTCTCVALTQVENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKS 252          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_RAT (60S ribosomal protein L7a OS=Rattus norvegicus GN=Rpl7a PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.652e-32
Identity = 60/95 (63.16%), Postives = 80/95 (84.21%), Query Frame = -3
Query:  292 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 576
            AQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  152 AQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
BLAST of CN186653 vs. ExPASy Swiss-Prot
Match: RL7A_MOUSE (60S ribosomal protein L7a OS=Mus musculus GN=Rpl7a PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.652e-32
Identity = 60/95 (63.16%), Postives = 80/95 (84.21%), Query Frame = -3
Query:  292 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKS 576
            AQLVVIAHDVDPIELVV+LPALCRKM +PYCI+KGK+RLG +VH+KT + +  T V +EDK   +K++EAI+ N+ND+Y+E+R+ WGG ++G KS
Sbjct:  152 AQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKS 246          
The following BLAST results are available for this feature:
BLAST of CN186653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RL7A_ORYSJ7.680e-4880.8760S ribosomal protein L7a OS=Oryza sativa subsp. j... [more]
RL7A1_ARATH3.812e-4792.7160S ribosomal protein L7a-1 OS=Arabidopsis thalian... [more]
RL7A2_ARATH6.502e-4791.6760S ribosomal protein L7a-2 OS=Arabidopsis thalian... [more]
RL7A_DROME5.709e-3569.4760S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL7A_ICTPU4.091e-3366.3260S ribosomal protein L7a OS=Ictalurus punctatus G... [more]
RL7A_TAKRU9.115e-3366.3260S ribosomal protein L7a OS=Takifugu rubripes GN=... [more]
RL7A_BOVIN1.555e-3263.1660S ribosomal protein L7a OS=Bos taurus GN=RPL7A P... [more]
RL7A_ANOGA2.031e-3262.1160S ribosomal protein L7a OS=Anopheles gambiae GN=... [more]
RL7A_RAT2.652e-3263.1660S ribosomal protein L7a OS=Rattus norvegicus GN=... [more]
RL7A_MOUSE2.652e-3263.1660S ribosomal protein L7a OS=Mus musculus GN=Rpl7a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003D23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186653 ID=CN186653; Name=CN186653; organism=Citrus sinensis; type=EST; length=578bp
TTTTTTTTTTTTTTTTTCCTAAAAAGGAATGTGGACTTGCAATACGTTCC
TCATATCAAAAAGGCACATACTAATGGTGCAAACATATACCAGTTCAGAA
GTTCAATTAAAAATCTTAATAAGGTAAAATGCTAAAAGACTACATAAAAA
CATGTTCATTAAAATAAAAAGATGATGAAAGCACAAGAAATAACAAAACA
TTGGACTCTCTTAAGACTGAGCAAAATCCTAGGTCAGCCTCTGAGCAGCT
TCCTTAGCAAGAAGTTTCTCCTTGGCCTTGGTTTTTGCCTGTGATTTGGA
GCCCATAATACCACCTCCCCACTTCTTTCTTAACTCCTCGTACTTGTCGT
TGAAGTTAGCCTTGATGGCCTCAAGGATCTTGCTGAATTCCATCTTATCC
TCATTCTTAACTGTTGTCAAACACAATACAGAAGCCGTCTTCTTGTGGAC
AATCGATCCCAAACGTGATTTTCCTTTGACAATGCAGTATGGGATCTCCA
TCTTCCTGCACAAGGCAGGAAGCCAGACAACCAACTCAATCGGGTCAACA
TCATGAGCAATGACAACCAATTGTGCCT
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