CN186650

Overview
NameCN186650
Unique NameCN186650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12576 contig Csv1_Contig12576:279..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: DAPB2_ARATH (Dihydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.202e-26
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = -2
Query:  549 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 680
            PG F+GY L+V+ESHQA KLD SGTAKAVIS FQKL VS+DMDQ
Sbjct:  218 PGAFAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMDQ 261          

HSP 2 Score: 68.1662 bits (165), Expect = 3.202e-26
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = -3
Query:  434 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCI 547
            VSF+FQHNVCGRSIYAEGTVDA+LFL+KK++SKA+K I
Sbjct:  299 VSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRSKAEKRI 336          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: DAPB1_ARATH (Dihydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.434e-25
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = -2
Query:  549 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 680
            PG FSGY L V+ESHQA KLD SGTAKAVIS FQ+L VS+DMDQ
Sbjct:  216 PGAFSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQ 259          

HSP 2 Score: 65.855 bits (159), Expect = 3.434e-25
Identity = 30/38 (78.95%), Postives = 36/38 (94.74%), Query Frame = -3
Query:  434 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCI 547
            VSF+FQHNVCGRSIYAEGTVDA+LFL+KK++ KAD+ I
Sbjct:  297 VSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRLKADQRI 334          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: DAPB1_ORYSJ (Probable dihydrodipicolinate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.372e-23
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = -2
Query:  549 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 680
            PG FSGY L+V+ESHQA KLD SGTAKAVIS FQKL VSF++++
Sbjct:  212 PGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNE 255          

HSP 2 Score: 64.6994 bits (156), Expect = 1.372e-23
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = -3
Query:  440 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADK 547
            VSF+FQHNVCGRSIYAEGTVDA LFL KK+QS A+K
Sbjct:  293 VSFEFQHNVCGRSIYAEGTVDAALFLHKKIQSGANK 328          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: DAPB2_ORYSJ (Probable dihydrodipicolinate reductase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.670e-23
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = -2
Query:  549 PGGFSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQ 680
            PG FSGY L+VLESHQAGKLD SGTAKAVI+ F+KL VS+DM++
Sbjct:  194 PGAFSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMNR 237          

HSP 2 Score: 58.5362 bits (140), Expect = 6.670e-23
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = -3
Query:  434 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCI 547
            VSF+FQHNVCGRSIYAEG+VDA +FL +KV+S   K I
Sbjct:  275 VSFEFQHNVCGRSIYAEGSVDAAMFLHRKVRSNDSKRI 312          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_RAT (Aspartyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Dars PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   13 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            GID++ I  YIDSFR+GAPPH G G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct:  446 GIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_PONAB (Aspartyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=DARS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   13 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            GID++ I  YIDSFR+GAPPH G G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct:  446 GIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_MOUSE (Aspartyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   13 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            GID++ I  YIDSFR+GAPPH G G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct:  446 GIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_HUMAN (Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   13 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            GID++ I  YIDSFR+GAPPH G G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct:  446 GIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_BOVIN (Aspartyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=DARS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.972e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   13 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            GID++ I  YIDSFR+GAPPH G G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct:  446 GIDLEKIKAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_CAEEL (Aspartyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=drs-1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   16 IDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            +D+  I +YIDSF+YG PPH G G+GLERV MLF GL+NIR  SL+PRDP R+ P
Sbjct:  477 VDLAKIQSYIDSFKYGCPPHAGGGIGLERVTMLFLGLHNIRLASLFPRDPKRLTP 531          
The following BLAST results are available for this feature:
BLAST of CN186650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DAPB2_ARATH3.202e-2677.27Dihydrodipicolinate reductase 2, chloroplastic OS=... [more]
DAPB1_ARATH3.434e-2577.27Dihydrodipicolinate reductase 1, chloroplastic OS=... [more]
DAPB1_ORYSJ1.372e-2372.73Probable dihydrodipicolinate reductase 1, chloropl... [more]
DAPB2_ORYSJ6.670e-2375.00Probable dihydrodipicolinate reductase 2, chloropl... [more]
SYDC_RAT9.972e-1766.07Aspartyl-tRNA synthetase, cytoplasmic OS=Rattus no... [more]
SYDC_PONAB9.972e-1766.07Aspartyl-tRNA synthetase, cytoplasmic OS=Pongo abe... [more]
SYDC_MOUSE9.972e-1766.07Aspartyl-tRNA synthetase, cytoplasmic OS=Mus muscu... [more]
SYDC_HUMAN9.972e-1766.07Aspartyl-tRNA synthetase, cytoplasmic OS=Homo sapi... [more]
SYDC_BOVIN9.972e-1766.07Aspartyl-tRNA synthetase, cytoplasmic OS=Bos tauru... [more]
SYDC_CAEEL7.146e-1563.64Aspartyl-tRNA synthetase, cytoplasmic OS=Caenorhab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003D21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186650 ID=CN186650; Name=CN186650; organism=Citrus sinensis; type=EST; length=804bp
ATTCAGGCATGTGGCATTGATGTTAAGACAATATCAACATATATTGATTC
TTTCAGATATGGTGCACCTCCTCATGGTGGATTTGGAGTGGGATTGGAGC
GTGTGGTGATGCTTTTCTGTGGTCTTAACAACATTCGTAAAACATCACTC
TACCCACGTGATCCACTTAGGATTGCCCCGTGATGATCTGCTTCAGCTAT
CAACTGCGGTTTATAGATTGCTCTATTTCTACTTTAAACTATTTTCGTAT
GAAATGATCATCTATATGCTTCACTCATTTTTGCATCCATTTTAATCCGT
GCCAATGTATAATTGTTGTTTGAGATGGTATCCATAACGTTTAATATCAG
TAACGGTATTCAGTATACTCATCAATGAGGCTTGAAATAAGTCTTTCAGA
CAAAAGGTTATATTTGTTGCATACAAAAAAAGAGATACACTTGTCTGCCT
TCGACTGAACCTTCTTAGAAAGGAAAAGCAGAGCATCAACAGTCCCCTCT
GCATAAATTGATCTACCGCAAACATTATGCTGAAATTGAAAAGAAACTCT
GATCCATATCAAAAGACACCCTTAATTTCTGAAAGCTTGAGATAACAGCT
TTGGCAGTTCCAGATGTGTCCAATTTACCAGCTTGATGGGACTCCAACAC
CTGCAAAAAATACCCAGAGAAGCCTCCAGGAATAACCAAAGCATTTTTCA
TTCATACCCAGAGGTTTCACTTGCTGCCAAGCCTTCAATCCCACAGGTTT
GTTGGACGTTTGCACACTCCAAAATCCAGTGAGACAACAATCATTCTCCC
TCCT
back to top