CN186646

Overview
NameCN186646
Unique NameCN186646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7609 contig Csv1_Contig7609:70..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186646 vs. ExPASy Swiss-Prot
Match: T10_MOUSE (Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 55/174 (31.61%), Postives = 91/174 (52.30%), Query Frame = -2 
Query:  215 TEAHQYNGFNLIVADVSSKS---MVYVSNRPKGEPITIQEVSPGIHVLSNAKLDSPWHKAQRLGLNFREQLAKYGKGQ---IPVKEMVEKLMQDSVKADKSRLPGICSLD----WEFDLSSVFVEVDTPLGLYGTRSTAALTIDEGGKLSFYEK-YLEEDT--WKEKSEKFYIQ 697
            TE H YNGFN+I AD+S+     + Y  NR + EPI +   +PG + LSNA L++PW K     L F +QL      Q   +P   +V +L+ D +  ++++LP     D    +   + + +  V      YGTR+   + +D  G ++F E+  L++DT  W+  + +F +Q
Sbjct:  111 TEGHLYNGFNIIAADLSTSKGDVVCYYGNRGEPEPIVL---TPGTYGLSNALLETPWKK-----LCFGKQLFMEAVEQSEALPKDVLVTQLL-DVLNNEEAQLPDPAIEDQGQEYVQPILNKYAAVWCRCASYGTRTNTIILVDANGHVTFTERSMLDKDTSRWETNTYEFTLQ 275
The following BLAST results are available for this feature:
BLAST of CN186646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
T10_MOUSE9.894e-1231.61Ser/Thr-rich protein T10 in DGCR region OS=Mus mus... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186646 ID=CN186646; Name=CN186646; organism=Citrus sinensis; type=EST; length=698bp
ATTATAATTGAAGAAGACACACTGCTCTTCATGATAAAGTTTGCCTGGTC
TTCGGAGCACATGAAAGGCAACATTCATTGCCTTCTAGCTCCATTATGTT
TCTCTGTTGCCAGAAAACATTAAGGAAAGACGATTTATGCATACGTACAA
AAACATAGATGATTAATCTCTTATTTAGACACCGATATTTCAGAATCTTG
ATCTACTTTAGCTTCTGAATATAAAATTTTTCAGATTTCTCCTTCCATGT
ATCCTCTTCAAGATACTTCTCGTAAAAGCTTAATTTCCCACCTTCATCTA
TGGTTAATGCAGCGGTGCTCCTTGTGCCATAAAGTCCCAGTGGTGTGTCT
ACTTCAACAAACACAGAGCTTAGATCGAATTCCCAATCAAGAGAACAAAT
ACCAGGCAATCTACTTTTATCTGCTTTAACCGAGTCCTGCATTAGTTTTT
CAACCATTTCTTTCACGGGTATTTGACCTTTGCCATATTTGGCAAGCTGT
TCCCTGAAGTTCAATCCAAGACGCTGAGCCTTGTGCCAGGGGGAATCAAG
CTTTGCATTTGAAAGCACGTGAATGCCTGGAGAAACCTCTTGAATGGTGA
TTGGTTCTCCTTTTGGTCGGTTGGAGACATAAACCATGCTCTTGGATGAT
ACATCAGCTACAATCAGGTTAAATCCATTGTACTGGTGAGCCTCTGTC
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