CN186612

Overview
NameCN186612
Unique NameCN186612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8195 contig Csv1_Contig8195:32..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186612 vs. ExPASy Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.432e-12
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 3 
Query:   78 ILVRKVGGEKNLAPGVKESL-----KKCVPDSRI----VMNRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEKL 452
            I  RK+  + N   G  + L     +K  PD +     +  ++ +GL+ G  +QFGN +SE    KTR+ W PNV +K L+S  ++R I +K+T   L+ I K GGID YL K    ++       WK +   L
Sbjct:   27 IETRKIAKQPNYQVGDAKPLHMPKERKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETLNRKISIKMTAKVLKTISKEGGIDNYLTKEKSARIKELGPTGWKLRYRVL 159
[Close]
BLAST of CN186612 vs. ExPASy Swiss-Prot
Match: RL28_MAGSM (50S ribosomal protein L28 OS=Magnetococcus sp. (strain MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.015e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 3 
Query:  177 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLK 389
            A++    GK  Q GN+VS     KTRR W PN+Q K L+S  + + ++V ++T ALR +D AGG+D YLLK
Sbjct:    2 ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVDNAGGLDNYLLK 71
The following BLAST results are available for this feature:
BLAST of CN186612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RM24_YEAST1.432e-1233.5854S ribosomal protein L24, mitochondrial OS=Saccha... [more]
RL28_MAGSM6.015e-1146.4850S ribosomal protein L28 OS=Magnetococcus sp. (st... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003C23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186612 ID=CN186612; Name=CN186612; organism=Citrus sinensis; type=EST; length=788bp
TTTACGAAAAACTAGAATCGCAAAGAAGAGAAGTAGCAATACGCGATATG
GCGTTTCGAGGGAAGGAGATGATGAACATTCTAGTGAGGAAGGTAGGGGG
AGAGAAGAACTTGGCTCCGGGAGTAAAAGAATCTCTTAAGAAATGTGTAC
CCGACAGCAGGATCGTCATGAACCGAGCCAAACGCGGTCTCTTCGCTGGC
AAACACATCCAGTTCGGCAATCGCGTCAGCGAAGATGGCGGTAACAAGAC
TAGGAGGAATTGGAAGCCAAATGTCCAGGAGAAGCGGCTATTTAGTTATA
TAATGGATCGTCACATTAGAGTCAAAGTCACAACACATGCACTCCGCTGC
ATTGACAAGGCAGGGGGGATCGATGAATACCTGCTAAAGACCCCTTACCA
CAAGATGGACACAGAAATGGGTCTTTACTGGAAGACCAAGATTGAGAAGC
TTTATGAAGAACTTGGGCAGACGGAAGTGGCATTCTTTACACCTGAGGAA
GAAGCCAAGCTGGAACAGGACTTTAAAGACATGAAACTCGCTCAGAGAGC
CGCACGTAGGGAACTCAGAAGACAGATGTATGGAGGGTCAAGCAAACAGA
AACAAATTGAGCAAGGAAGTGCAGATACCCAGGAAACTGCTGAGGAAGCA
GCAAAAATCCTCAGTGAAGGAATTCCAAACGAGTATGCTCCCGAGGATCT
GGTTGCCAATTCTTAAGTTTTGACCTTCTCACTGCTTGGAATGTTGCTCA
CATTTTTGTTAGTAGCTATCAAGTTTTGGATTTTAATC
back to top