CN186609

Overview
NameCN186609
Unique NameCN186609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:269..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186609 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.146e-27
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = -2 
Query:  387 KLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 740
            KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                   ARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    6 KLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CN186609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.146e-2755.08Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186609 ID=CN186609; Name=CN186609; organism=Citrus sinensis; type=EST; length=762bp
AGTATAAAACATATATGCTCATCACGACCGTCCACGAAGCCATGATCTTG
GCTCTTACAAAATGACAATCAAAAACATGTCCTAAACCCAAAAACCAGCA
ACCTTTCATCTCCGCCCACAGCTTAGCAATCCTCACATCACATACAATTA
TTAAATTATATGATATAAAAACATCACAGTCTTTAATTTACTTTTAGTCA
GCAGCATTTTAAAACCAAACTTTAGATAGGAAGGACACGTAATACAAATA
GCATTAACAAAACGACAAGGACACGTTGCGAAATCCAAAACGAAACGACA
CTATCTACAGACTACAGGCAACTCATCCGGTGAGTTGGTGACCCATCACA
TTCATTTACATCGCTGTAGCGTATCATCCACTAGTGATGATGCTTGCTCC
TAGTCTCCCCACTGTAAAGCCAGTCATAAACAGTGGGAGAGTTAGGATGT
GTGGGCTTGTCAAAGACCTCTGCACCGATACCCCTAGTAGCAAGGTTGCT
ACCGGGGTGAAACACGCTCCTCCACACGTTGTCCTTACGCGCCGACAGCG
GCGTCGTCGGCGTCACTGGCGTCGACGGTGCCCCTGGACTCGCTGGCATT
GACAGAGACCTCTGGAACTTGCCCGACGACGACTCCGCCTCACCACCCTC
TTTGACTGCTAAGGGTGTTGTGGTGATTTTCCTCAGCCTGCCAAGGCCAC
GATCAGGCTGAGGCCCTGCCACAACATCGTCCCAAAGCTTTCTCTAGCAT
CTTTAAATTTAC
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