CN186604

Overview
NameCN186604
Unique NameCN186604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186604_ssr140 microsatellite CN186604_ssr140:140..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4897 contig Csv1_Contig4897:150..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186604 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.569e-19
Identity = 71/196 (36.22%), Postives = 108/196 (55.10%), Query Frame = -2
Query:  223 EDLFMGSPSVIPSVSEKSQKDVKNDVMNLFGKSEMVSPFSIDQQQSFLAA-------ASVNSNGGSQSFPINVHQPG-SNGIHVPIQSW-GVVGHQVPGMMMPI---ADQQKYVQ------MRNSQLLYPAGNFVNLPTSSMYTQRPMAPINGAMNIGATRRPPASAVSSVTRT--QLGNGKDHDFSSLTRGMFTK 750
            EDLF  +P++    ++++ KDVK D+M+LF K+ +VSPF++ QQQ  + A       A+  + GG+   P  V+Q   +N ++V   +W    G+Q+PGM  P+   AD QK +Q        N++   P  N +  P+SS YT      +NG M   +T +P +S+ +  T T     +GKD DFSSL  GMFTK
Sbjct:  294 EDLFKDTPNL---TTQQAPKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGT---PNGVNQQAIANALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNG-MTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSSLMDGMFTK 482          
The following BLAST results are available for this feature:
BLAST of CN186604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD5_ARATH1.569e-1936.22Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186604 ID=CN186604; Name=CN186604; organism=Citrus sinensis; type=EST; length=784bp
CTCACTTTATATTACATTGTGTATAAAACCTTGTGATACACACGATTGCC
ACAATAGTTCAATAGAATAAAATATAAATAACCCACAATAAATAGGAAAA
ATAATAAAGGCTATCTAACCAAAATAACAAAGAATGCACTTATTTATTTA
TTTATTAAAAAAAAAAAACCTATTTCTGTCATACTAAAAAAAAACAAAGC
ATTCTCTGACAATCAGTTACTGTTTTGTAAACATCCCTCGAGTTAGAGAT
GAAAAATCATGATCTTTTCCATTTCCTAGTTGAGTACGAGTGACTGAGGA
AACTGCAGATGCTGGAGGACGCCTCGTAGCTCCAATATTCATTGCACCGT
TAATTGGAGCCATTGGCCGTTGTGTATACATGCTGGATGTCGGAAGATTA
ACAAAATTCCCAGCCGGATACAAAAGTTGGCTATTTCTCATCTGCACATA
TTTCTGTTGATCAGCAATGGGCATCATCATTCCAGGAACTTGATGGCCAA
CAACTCCCCAGCTCTGAATGGGTACGTGAATGCCATTAGAACCAGGTTGA
TGTACATTGATCGGAAAGGATTGAGACCCACCATTAGAATTTACAGAAGC
AGCTGCAAGGAAAGACTGTTGTTGATCGATAGAAAATGGAGACACCATTT
CAGACTTTCCGAAGAGGTTCATAACATCATTCTTTACATCTTTCTGGGAT
TTCTCTGAAACAGATGGTATGACTGATGGTGAACCCATAAATAGATCCTC
AATTCTGTATCTCGTTTGTACCTTGCTTTCAGTT
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