CN186599

Overview
NameCN186599
Unique NameCN186599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13421 contig Csv1_Contig13421:405..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186599 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 52/145 (35.86%), Postives = 85/145 (58.62%), Query Frame = 3
Query:    9 LVQEAALVAVT*GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD-TSRASVNYLADASWLAH 440
            L+ EAAL+A   G E I   ++++A+DR+T+G +R+G+ +  + + + A  E G A++   L   ++ KV    +ISI+PRG  L   V  +L  E      +  L +++ VLLGGRAAEEV +G+D  +  + N L  A+ LA+
Sbjct:  368 LLNEAALLAARKGKEEITMEEIEEALDRITMGLERKGMTISPKEKEKIAIHEAGHALMG--LVSDDDDKVH---KISIIPRGMALG--VTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAY 505          
BLAST of CN186599 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 46/137 (33.58%), Postives = 77/137 (56.20%), Query Frame = 3
Query:    9 LVQEAALVAVT*GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNY 413
            LV +AAL A   G E +   +++ + D++ +GP+RR +E+ N+ ++  A  E G A+I+     Y        ++ +I+PRG TL  +    L +     E R QLL ++ V +GGR AEE+I+G D  T+ AS ++
Sbjct:  491 LVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIA-----YYTKDAMPINKATIMPRGPTLGHVSL--LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDF 620          
BLAST of CN186599 vs. ExPASy Swiss-Prot
Match: YMEL1_HUMAN (ATP-dependent metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 46/137 (33.58%), Postives = 77/137 (56.20%), Query Frame = 3
Query:    9 LVQEAALVAVT*GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNY 413
            LV +AAL A   G E +   +++ + D++ +GP+RR +E+ N+ ++  A  E G A+I+     Y        ++ +I+PRG TL  +    L +     E R QLL ++ V +GGR AEE+I+G D  T+ AS ++
Sbjct:  549 LVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIA-----YYTKDAMPINKATIMPRGPTLGHVSL--LPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDF 678          
BLAST of CN186599 vs. ExPASy Swiss-Prot
Match: YMEL1_RAT (ATP-dependent metalloprotease YME1L1 OS=Rattus norvegicus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 46/137 (33.58%), Postives = 77/137 (56.20%), Query Frame = 3
Query:    9 LVQEAALVAVT*GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQD--TSRASVNY 413
            LV +AAL A   G E +   +++ + D++ +GP+RR +E+ N+ ++  A  E G A+I+     Y        ++ +I+PRG TL  +    L +     E R QLL ++ V +GGR AEE+I+G D  T+ AS ++
Sbjct:  491 LVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIA-----YYTKDAMPINKATIMPRGPTLGHVSL--LPENDRWNEIRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDF 620          
BLAST of CN186599 vs. ExPASy Swiss-Prot
Match: FTSH_BACSU (Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    9 LVQEAALVAVT*GHESILSSDMDDAVDRLTVGPKRRGIELGNQGQSRRAATEVGVAMISHLLRRYENAKVECCDRISIVPRGQTLSQLVFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGQDTSRA 401
            L+ EAALVA     + I + D+D+A DR+  GP ++   +  + ++  A  E G  +I  +L      + +   +++IVPRGQ     V   L  E   F+ +P+LL ++  LLGGR AEE+I+G+ ++ A
Sbjct:  373 LLNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLVLD-----EADMVHKVTIVPRGQAGGYAVM--LPREDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVSTGA 496          
The following BLAST results are available for this feature:
BLAST of CN186599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FTSH_AQUAE1.648e-1235.86Cell division protease ftsH homolog OS=Aquifex aeo... [more]
YMEL1_MOUSE6.262e-1233.58ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
YMEL1_HUMAN6.262e-1233.58ATP-dependent metalloprotease YME1L1 OS=Homo sapie... [more]
YMEL1_RAT1.068e-1133.58ATP-dependent metalloprotease YME1L1 OS=Rattus nor... [more]
FTSH_BACSU6.923e-1133.59Cell division protease ftsH homolog OS=Bacillus su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186599 ID=CN186599; Name=CN186599; organism=Citrus sinensis; type=EST; length=732bp
CGTATCAGCTGGTCCAAGAGGCTGCTCTTGTGGCAGTTACGTAAGGGCAT
GAATCCATTCTTTCGTCAGACATGGATGATGCAGTTGACCGACTTACGGT
GGGACCCAAACGTCGTGGTATAGAATTAGGTAATCAGGGACAGAGCCGTA
GAGCTGCTACCGAAGTTGGAGTTGCCATGATTTCTCATCTCCTCAGACGA
TATGAAAATGCAAAAGTTGAATGTTGTGATCGCATTTCTATTGTTCCTCG
TGGTCAGACATTATCACAATTAGTATTTCATCGGCTTGACGATGAATCAT
ACATGTTTGAGCGGCGTCCACAATTGCTGCATCGCCTTCAGGTTTTACTA
GGAGGGAGGGCTGCAGAGGAGGTCATTTATGGACAAGACACGTCCAGAGC
ATCTGTTAACTACCTTGCTGATGCATCTTGGCTGGCTCATGGAATTTGGA
GAATCCAATGGTCATACATGGAGAACCACCTCCATGGAGAAAGAAAGTAA
AATTTGTTGGCCCACGGCTAGACTTTGAAGGATCCCTGTATGATGATTAT
GGCCTAACTGAACCTCCTGTGAACTTCAATTTGGATGATGACATTGCATG
GCGGACTGAAGAGTTATTGCGTGACATGTATGGAAGGACAGTCACTCTGC
TGCGGAGGCACCATGCAGCATTGCTTAAAACTGTGAAGGTTCTTCTTAAT
CAGAAAGAAATCGGAAGAGAAGAGATTGACTT
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