CN186594

Overview
NameCN186594
Unique NameCN186594
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12117 contig Csv1_Contig12117:89..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.799e-70
Identity = 122/169 (72.19%), Postives = 143/169 (84.62%), Query Frame = -3
Query:  239 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 745
            GITFIDSRGDGRY ISNGKDQ IKLWDIRKMSSNA   +  R+ EWDYRWM+YP +ARDLKHP D S ATYKGHSVL TLIRC+FSP YSTGQKYIYTGSHD+ VY+YDLV+G+QV+ L+YH + VRDCSWHP+ PMLVSSS+DG++V+WE+ GN EA    N +R++R
Sbjct:  305 GITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNAGGTIQSRNSEWDYRWMEYPQEARDLKHPSDLSGATYKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQVSTLQYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPVQGNNQRLQR 473          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.560e-69
Identity = 117/171 (68.42%), Postives = 136/171 (79.53%), Query Frame = -3
Query:  233 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 745
            G+TFIDSRGDGRY ISNGKDQ  +LWDIRKMSS A  +   R ++WDYRWM+YP  A+ LKHP DQS+ATY+GH VLRTLIRC+ SP YSTGQKYIYTGS D CVY+YDLV+G QVA L +H  PVRDCSWHP  PMLVSSSWDG + RWEFPG+ +  P L + R RR++
Sbjct:  303 GVTFIDSRGDGRYFISNGKDQTTQLWDIRKMSSRAMYSPRLRDHDWDYRWMEYPAHAKTLKHPNDQSLATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGD-DQVPTLERPRARRKE 472          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: DCA11_PONAB (DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.449e-43
Identity = 86/156 (55.13%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  290 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 745
            GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  357 GITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: DCA11_HUMAN (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.449e-43
Identity = 86/156 (55.13%), Postives = 106/156 (67.95%), Query Frame = -3
Query:  290 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 745
            GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R LK P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  357 GITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: DCA11_BOVIN (DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.177e-43
Identity = 86/156 (55.13%), Postives = 105/156 (67.31%), Query Frame = -3
Query:  290 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 745
            GITFIDS+GD RYLISN KDQ IKLWDIR+ SS        ++     WDYRW   P +A R LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  357 GITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: DCA11_RAT (DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.455e-43
Identity = 86/156 (55.13%), Postives = 104/156 (66.67%), Query Frame = -3
Query:  290 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 745
            GITFIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WDYRW   P +A + LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG +  W++
Sbjct:  357 GITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKKAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGSLRLWQY 512          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: DCA11_MOUSE (DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.215e-42
Identity = 86/156 (55.13%), Postives = 104/156 (66.67%), Query Frame = -3
Query:  290 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 745
            GITFIDS+GD RYLISN KDQ IKLWDIR+ SS     +  L      WDYRW   P  A + LK P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  357 GITFIDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: DCA11_CAEEL (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.468e-35
Identity = 82/167 (49.10%), Postives = 103/167 (61.68%), Query Frame = -3
Query:  266 GITFIDSRGDGRYLISNGKDQAIKLWDIRK---MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 745
            G+T +DSR D RYL+SN KDQ IK+WD+RK   MS   +     +S  WDYRW   PP    L  P   D SV T +GHSVL TL+R +FSP  STG++YIYTG     V VYD++SG     LK HT+ VR+C WHP++  +VSS+WDG   V  W+    G  AP
Sbjct:  361 GVTHVDSRQDERYLLSNSKDQTIKVWDLRKFSNMSGVEATRACVQSQHWDYRWQPAPP---GLCQPVAGDTSVMTLRGHSVLHTLVRANFSPE-STGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAP 523          
BLAST of CN186594 vs. ExPASy Swiss-Prot
Match: DCA11_CAEBR (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.759e-33
Identity = 77/167 (46.11%), Postives = 99/167 (59.28%), Query Frame = -3
Query:  266 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG---FRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 745
            G+T++DSR D RYL+SN KDQ IK+WD+RK S            +S  WDYRW   PP    L  P   D SV T +GHSVL TL+R  FSP  +TG+++IYTG     + VYD+V+G     LK H + VR+C WHP +  +VS+SWDG   V  W+    G  AP
Sbjct:  340 GVTYVDSRQDERYLLSNSKDQTIKVWDLRKFSCQGGVEATRACVQSQHWDYRWQPAPP---GLCQPVQGDTSVMTLRGHSVLHTLVRAKFSPE-NTGRRFIYTGCARGEIVVYDIVTGTVSRRLKGHQAVVRECDWHPQENEIVSTSWDGVTTVWTWDERAEGVIAP 502          
The following BLAST results are available for this feature:
BLAST of CN186594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LE14B_LITER1.799e-7072.19LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
LE14B_PRUAR7.560e-6968.42LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
DCA11_PONAB2.449e-4355.13DDB1- and CUL4-associated factor 11 OS=Pongo abeli... [more]
DCA11_HUMAN2.449e-4355.13DDB1- and CUL4-associated factor 11 OS=Homo sapien... [more]
DCA11_BOVIN4.177e-4355.13DDB1- and CUL4-associated factor 11 OS=Bos taurus ... [more]
DCA11_RAT5.455e-4355.13DDB1- and CUL4-associated factor 11 OS=Rattus norv... [more]
DCA11_MOUSE1.215e-4255.13DDB1- and CUL4-associated factor 11 OS=Mus musculu... [more]
DCA11_CAEEL5.468e-3549.10DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
DCA11_CAEBR1.759e-3346.11DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186594 ID=CN186594; Name=CN186594; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTGATACATTAAAACATTTATTCAGGAATTCCCTTTAG
CATACTGTGATCATAATCACATTATTGGACCATACCTTACAACACATTTT
GTGATTTTGAAATGTGGAAGTCATTTTTGAGTACATAAAGCCTCATATTT
TAGCATATAAATTAACAGCATTTTCAACTGTCTTTATTCATCACATCATA
ACATAAATAGTTTGCATGCATCACAAGTAAAACTGTCTCCTCCGGATCCT
CTTCTTGTTTAGAGGAGGAGCAGCTTCTCCATTACCCGGAAACTCCCACC
TGACAACATCTCCATCCCAAGAAGAGCTAACAAGCATTGGTTGACTTGGG
TGCCAACTACAGTCTCTAACGGGTGAAGTATGGTACTTGAGTGCAGCAAC
TTGCTCACCACTCACCAGGTCATAAACATAAACACAAGAATCATGGGATC
CAGTGTAGATATACTTTTGGCCAGTGCTGTATACAGGGGAAAAGTGGCAC
CGGATAAGAGTACGCAAGACAGAATGACCTTTATACGTAGCAACGGATTG
ATCACATGGGTGTTTCAAATCTCTTGCCTGGGGTGGGTAGTCCATCCATC
TGTAATCCCATTCATAACTCCTAAATCCTAAATTGCAGGATGCATTAGAG
GACATTTTCCGAATATCCCAAAGTTTGATGGCCTGATCTTTACCATTTGA
GATCAGATAACGACCATCTCCACGGCTATCAATGAACGTGATCCCTT
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