CN186583

Overview
NameCN186583
Unique NameCN186583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12768 contig Csv1_Contig12768:339..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186583 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.508e-60
Identity = 120/158 (75.95%), Postives = 130/158 (82.28%), Query Frame = -1
Query:   21 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDPVRRVTQLPSEAQKWKDSNSSLQEKIKELKAEKNELRDEKHRLKAEKEKIEQHLKALST-QPSFLTPPPAIHVAFV-AQGQAPGNKLIPFISYPGVAMCQFMPPDPVDPSQDHVLRPRV 488
            KACREK RRDRLNDKF+EL +ILEPG PPKTDKAAIL+D VR VTQL  EAQK KDSNSSLQ+KIKELK EKNELRDEK RLK EKEK+EQ LKA++  QPSF   PP +  AF  AQGQAPGNK++P ISYPGVAM QFMPP  VD SQDHVLRP V
Sbjct:   76 KACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPV 233          
BLAST of CN186583 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.397e-52
Identity = 107/160 (66.88%), Postives = 120/160 (75.00%), Query Frame = -1
Query:   21 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDPVRRVTQLPSEAQKWKDSNSSLQEKIKELKAEKNELRDEKHRLKAEKEKIEQHLKALSTQPS----FLTPPPAIHVAFVAQGQAPGNKLIPFISYPGVAMCQFMPPDPVDPSQDHVLRPRV 488
            KACREK RRDRLNDKF EL+S+LEPGR PKTDK AI+ D +R V Q   EAQK KD NSSLQEKIKELK EKNELRDEK +LK EKE+I+Q LKA+ TQP     FL  P  +     +Q QAPG+KL+PF +YPG AM QFMPP  VD SQDHVLRP V
Sbjct:   71 KACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTL-----SQAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPV 225          
BLAST of CN186583 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.470e-31
Identity = 77/154 (50.00%), Postives = 102/154 (66.23%), Query Frame = -1
Query:   27 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDPVRRVTQLPSEAQKWKDSNSSLQEKIKELKAEKNELRDEKHRLKAEKEKIEQHLKALSTQPSFLTPPPAIHVAFVAQGQAPGNKLIPFISYPGVAMCQFMPPDPVDPSQDHVLRP 488
            KACRE+LRR++LN++F++L+S+LEPGR PKTDK AIL D +R + QL  EA K +++N  L E+IK LKAEKNELR+EK  LKA+KEK EQ LK+++   S     P I  AF        NK+  + SY  + M  +MP    D S+D  LRP
Sbjct:  135 KACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAPSSGFI--PHIPAAF------NHNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRP 280          
BLAST of CN186583 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.730e-30
Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = -1
Query:   42 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDPVRRVTQLPSEAQKWKDSNSSLQEKIKELKAEKNELRDEKHRLKAEKEKIEQHLKALST-QPSFLTP--PPAIHVAFVAQGQAPGNKLIPFISY-PGVAMCQFMPPDPVDPSQD 488
            KACREKLRR++LNDKF++L+S+LEPGR PKTDK+AIL D +R V QL  EA + +++N  L E+IK LKA+KNELR+EK  LKAEKEK+EQ LK++    P F+    P A H   +A          P+  Y P + M   +PP   D S+D
Sbjct:  167 KACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHPAAFHSHKMAVA-------YPYGYYPPNMPMWSPLPPADRDTSRD 312          
BLAST of CN186583 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.578e-17
Identity = 60/172 (34.88%), Postives = 91/172 (52.91%), Query Frame = -1
Query:   45 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDPVRRVTQLPSEAQKWKDSNSSLQEKIKELKAEKNELRDEKHRLKAEKEKI----EQHLKALS------TQPSFLTPPPAIHVAF---VAQGQAPGNKLIPFISY-----------PGVAMCQFMPPDPVDPSQ 488
            KA REKLRR++LN+ FVEL ++L+P RP K DKA IL D V+ + +L SE  K K   ++L ++ +EL  EKN+LR+EK  LK++ E +    +Q L+++S           + PPP+        +  G  P +  +P  +Y           P      +MPP+ V   Q
Sbjct:   63 KAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMPYMPPNTVVEQQ 233          
BLAST of CN186583 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.133e-14
Identity = 47/122 (38.52%), Postives = 79/122 (64.75%), Query Frame = -1
Query:  132 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDPVRRVTQLPSEAQKWKDSNSSLQEKIKELKAEKNELRDEKHRLKAEKEKIE-QHLKALSTQPSFLTPPPAIHVAFVA--QGQA 488
            KA REKLRRD+L ++F+EL + L+P RP K+DKA++L D ++ +  + ++  + K    +L ++ +EL  EK+ELR+EK  LK++ E +  Q+   + T   ++ P  + H+ FVA  QGQ+
Sbjct:   49 KAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPWV-PHYSYHIPFVAITQGQS 168          
The following BLAST results are available for this feature:
BLAST of CN186583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ILR3_ARATH1.508e-6075.95Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH4.397e-5266.88Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH104_ARATH1.470e-3150.00Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH034_ARATH4.730e-3050.33Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH121_ARATH1.578e-1734.88Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH2.133e-1438.52Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003C07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186583 ID=CN186583; Name=CN186583; organism=Citrus sinensis; type=EST; length=539bp
TGGAGGGTGCGTACTTAACCAACCCGAGGACGGAGTACATGATCCTGTGA
GGGATCCACTGGATCAGGGGGCATGAATTGGCACATTGCCACTCCCGGGT
AGCTGATGAAAGGGATCAACTTGTTTCCAGGTGCTTGGCCTTGGGCAACA
AATGCAACATGGATTGCTGGAGGAGGAGTTAAGAAACTGGGTTGTGTGCT
CAGAGCTTTGAGGTGCTGCTCTATCTTCTCTTTCTCTGCCTTTAGCCGGT
GCTTCTCATCACGAAGCTCATTCTTCTCAGCCTTCAACTCTTTGATCTTC
TCCTGGAGACTTGAATTTGAGTCCTTCCACTTCTGGGCTTCACTGGGTAA
TTGAGTCACCCTCCGGACGGGATCAATCAAAATAGCTGCCTTATCTGTTT
TGGGGGGCCTTCCAGGCTCTAAGATAGAGGCTAACTCCACAAACTTGTCA
TTAAGACGATCCCTACGCAACTTTTCCCTGCACGCCTTGGAGCTAGAAGA
CCCCCCTGATTCTGATCTAACCCTCTTTTTTGAGCTTTC
back to top