CN186580

Overview
NameCN186580
Unique NameCN186580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186580_ssr12 microsatellite CN186580_ssr12:12..23. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186580_ssr424 microsatellite CN186580_ssr424:424..435. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186580 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = -1 
Query:  537 YAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKLS 674
            YA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+ASYKLS
Sbjct:   72 YAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117
The following BLAST results are available for this feature:
BLAST of CN186580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
H1_SOLPN1.165e-1482.61Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186580 ID=CN186580; Name=CN186580; organism=Citrus sinensis; type=EST; length=674bp
CTTATTTTTCCTTATTATTATTATTTTTTTCGGATAGAACAGAGGTATTT
TAGAATACCTCTATTTCAAAGCAGAACATACAGGTACTTGCATTTTGTTT
TGGTTTCTATTGTAGCTTCTGGTACCGACGCTTCTCGAAGACAGGCCTTG
ACGACATGGCGAACAAGCAAGCACCATGCCATCAAGACGGAGATCATTAC
ATTCATTTATGCAAAACACGATCATACCGGGAGTTGACATGTACATGATA
CTTCTTAACAGACAAGAAAGTTGAAACTAGTTTGTACTTTACTAGTATTA
TATCATACATATTACTACTGGGCAGCAGCTTTCTTGGCTTTCTTAGCAGC
AGGGGACTTGATGGATTTGGGCTGCTTTGGTTTGGCAGCAGCTGATTTCT
TTGCCTTCTTAGGCGGAGGAGGAGCGGCGGCGGCGGACTCTGCTTTGATT
TTAGCTGCAGCAGTTACGGACCTTGTTTTCCTTGGGGCCTTGGCCTTGGT
CTTGATCTCTTTTTTGGTTTTGCCAGCTGCCGCTTCAGAGAGCTTGTAAG
AGGCCCTGATCTTGATGAGATTTCCTTTCGCGGCAAAGTGCTTCAGCTGC
ACTGCCAATATTTTCCTGAAATTCGCTGGGAGCTCATCCTTGTGCTTCTC
TTCCATGTACTTGGCTATTGCGTA
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