CN186579

Overview
NameCN186579
Unique NameCN186579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2617 contig Csv1_Contig2617:664..1392. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.007e-51
Identity = 94/151 (62.25%), Postives = 122/151 (80.79%), Query Frame = -3
Query:  282 NGVQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRI 734
            + VQ+MRMNYYPPCPQP++V+GL+PHSD+  LT+L+Q+N+VEGLQ+KKDGKW+PV PLP+AFIVNIGD LEIITNGTYRSIEHR VVNS +ERLS+AT ++V    EV P  SL+  +    F+R+ ++EY    ++R L GK+ LD+LRI
Sbjct:  208 DSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-31
Identity = 61/131 (46.56%), Postives = 90/131 (68.70%), Query Frame = -3
Query:  282 MGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRI 674
            +GLSPHSDA  LT+L+Q+NEV GL +KKD KW+P+ P+  AF+VNIGD +EI++NG Y+SIEHRAV+N+ +ERLS+A  +   Y  ++ P   L+ E     ++ +  E+Y       +L GKS LD +++
Sbjct:  223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLVKENGVK-YKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          

HSP 2 Score: 28.8758 bits (63), Expect = 2.159e-31
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = -2
Query:  670 SNEDELLPSMSSAREGYG 723
            + EDELLPSMSS  EG G
Sbjct:  207 NREDELLPSMSSCGEGLG 224          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28
Identity = 63/136 (46.32%), Postives = 85/136 (62.50%), Query Frame = -3
Query:  312 MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLISEKTPPLFRRMRIEEYFRSRYARELR 719
            MR NYYPPCP+PE+ +G  PH D  ALTILLQ ++V GL+V  DG+W PV+P+P A ++NIGDT   ++NG Y+S  HRAVVN  +ER S+A     R D  V PP S  + +  P F    +  + +  Y  + R
Sbjct:  229 MRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTR 363          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28
Identity = 63/136 (46.32%), Postives = 85/136 (62.50%), Query Frame = -3
Query:  312 MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLISEKTPPLFRRMRIEEYFRSRYARELR 719
            MR NYYPPCP+PE+ +G  PH D  ALTILLQ ++V GL+V  DG+W PV+P+P A ++NIGDT   ++NG Y+S  HRAVVN  +ER S+A     R D  V PP S  + +  P F    +  + +  Y  + R
Sbjct:  229 MRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTR 363          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 56/152 (36.84%), Postives = 93/152 (61.18%), Query Frame = -3
Query:  276 NYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGE------VYPP-SSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRIQH 710
            +YYP CPQPE   G S HSD+  LTIL+Q +++ GLQ+  + +WI V  +P A ++NI D L++ITN  ++S+EHR + N V  R+SVA  + ++   +      +Y P   LISE+ PP+++ + ++++   R+A+     S L   R+ +
Sbjct:  251 HYYPACPQPELTFGTSKHSDSGFLTILMQ-DQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRLNN 401          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.501e-26
Identity = 52/130 (40.00%), Postives = 85/130 (65.38%), Query Frame = -3
Query:  336 RMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLI---SEKTPPLFRRMRIEEYFR 716
            +++ YPPCP PE + GL  H+DA  L +L Q ++V GLQ+ KDG+WI V P+  + ++N+GD LE+ITNG YRS+EHR +  +   R+S+A+ Y+   D  +YP  +L+   +E+   ++ +   E+Y +
Sbjct:  158 KVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFEDYMK 287          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 56/129 (43.41%), Postives = 84/129 (65.12%), Query Frame = -3
Query:  342 VQAMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLISEKTPPLFRRMRIEEY 728
            V  +++NYYPPCP+P+  +G+  H+D + +TIL+  NEV+GLQV KDG W  V  +P+A IV+IGD +EI++NG Y+S+ HR  VN  + R+S         + EV P   L+SE  PP F+  + ++Y
Sbjct:  211 VYLLKINYYPPCPRPDLALGVVAHTDMSYITILVP-NEVQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPSEHEVGPIPKLLSEANPPKFKTKKYKDY 338          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 63/146 (43.15%), Postives = 91/146 (62.33%), Query Frame = -3
Query:  282 NYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYS--VRYDGEVYPP-SSLISEKTPPLFRRMRIEEYFRSRYARELRGKSQLDSLRI 710
            +YYPPCPQP+  +GL+ HSD + LTILLQ + + GLQV  D  W+ V P+P A +VN+GD L++ITN  + S+EHR + N    R+SVA  +S  +  +  VY P   ++SE+ PP +R   I EY +   ++   G S L  L+I
Sbjct:  221 HYYPPCPQPDLTLGLTKHSDNSFLTILLQ-DHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.811e-25
Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = -3
Query:  267 MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLISEKTP---PLFRRMRIEEYFRSRYARELRGKSQLDSLRIQHGQG 719
            MR+NYYPPC +P + +G  PH D  +LTIL Q N V GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V PP +L+    P   P F    + ++ +  Y  +++      S  +Q  QG
Sbjct:  204 MRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQG 356          
BLAST of CN186579 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.977e-25
Identity = 63/154 (40.91%), Postives = 86/154 (55.84%), Query Frame = -3
Query:  267 MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPPSSLISEKTP---PLFRRMRIEEYFRSRYARELRGKSQLDSLRIQHGQG 719
            MR+NYYPPC +P + +G  PH D  +LTIL Q N V GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V PP +L+    P   P F    + ++ +  Y  +++      S  +Q  QG
Sbjct:  204 MRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQG 356          
The following BLAST results are available for this feature:
BLAST of CN186579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
SRG1_ARATH9.007e-5162.25Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA2.159e-3146.56S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAOX2_ORYSJ6.281e-2846.32Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI6.281e-2846.32Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
DV4H_CATRO4.501e-2636.84Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCO_PRUMU4.501e-2640.001-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
FLS_PETHY1.003e-2543.41Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
ACCH1_ARATH1.310e-2543.151-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAO1B_WHEAT3.811e-2540.91Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT4.977e-2540.91Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186579 ID=CN186579; Name=CN186579; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTTTTTTTTGAATAAGCACCACTATACCTTTTGGGAAGATTC
CAGGCATAAGTCTGCAATTCTTAAGATTCTTACATGGTCTATTCAGTATC
TCAAATGATAGAGCTATTAGAAACACAACGACCCTAGCATAGCAGGGTAT
ACCACAGTATTCATAGAACTTATTTCTTATTTTCAGGTCCACACACAATC
TTAATGGCAAGGCCCTTCAGAGTTTTTGTACCAAACTCTTTAGTTATCCG
AAATAAACTTATACTAGCCTTGACCATGTTGAATTCTCAGGGAATCCAGC
TGAGATTTTCCCCTAAGCTCACGAGCATACCGGCTCCTAAAGTATTCTTC
AATTCTCATTCTTCTAAACAAAGGAGGAGTTTTTTCAGAGATCAAACTGG
AGGGAGGATACACTTCACCATCATATCTCACTGAGTAAACTGTGGCAACG
GAAAGTCTTTCCTGTACAGAGTTTACAACTGCACGATGCTCAATGCTACG
GTATGTCCCATTGGTTATAATCTCCAATGTGTCTCCAATGTTGACAATGA
AAGCATCCGGGAGTGGGGTAACAGGAATCCACTTTCCATCCTTCTTTACC
TGGAGACCCTCCACTTCATTAAGTTGTAGCAGAATGGTAAGTGCAGCTGC
ATCAGAATGTGGCGACAGGCCCATAACCTTCTCGGGCTGAGGACATGGAG
GGTAATAATTCATCCTCATTGCTTGCACTCCATTTT
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