CN186577

Overview
NameCN186577
Unique NameCN186577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11303 contig Csv1_Contig11303:672..1459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.239e-82
Identity = 147/247 (59.51%), Postives = 191/247 (77.33%), Query Frame = -1
Query:   47 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWK 787
            QALA R +GKP ++R+SGIPAP+LG+SP  SL+ATG+RLR+FA  L LN +F PIL PI  L  SSFRVDP+E L VNFMLQL  LLD+    V+ AL++AKSLNP VVTL EYE +LNR GF  R KNAL++Y+AVFESLEPN+  DS+ER +VER++ G RI+ L+ PEK G  RER+E+ E WR+ MEN+ FE +  S+YA+SQA+ILLWNYNYS L+++ +S    ++L+W  +PLLT+SSW+
Sbjct:  338 QALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDETPTIVDTALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNALQFYSAVFESLEPNLGRDSEERVRVERELFGRRISGLIGPEKTGIHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNYSNLYSIVESKPGFISLAWNDLPLLTLSSWR 584          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: SCL7_ARATH (Scarecrow-like protein 7 OS=Arabidopsis thaliana GN=SLC7 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.521e-75
Identity = 140/251 (55.78%), Postives = 184/251 (73.31%), Query Frame = -1
Query:   47 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPE----KQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWK 787
            QALA R +GKP ++RISGIPAP+LG SP  SL+ATG+RLR+FA  L LN EF P+L PI+ L  SSFRVDP+E LVVNFML+L  LLD+    V  AL++A+SLNP +VTL EYE +LNR  F  R KN+L++Y+AVFESLEPN+  DS ER +VER + G RI +L+  +    K G +   +E+ E WR+ ME + FE +  S+YA+SQA++LLWNYNYS L++L +S    ++L+W  VPLLTVSSW+
Sbjct:  292 QALATRSSGKPTRIRISGIPAPSLGDSPGPSLIATGNRLRDFAAILDLNFEFYPVLTPIQLLNGSSFRVDPDEVLVVNFMLELYKLLDETATTVGTALRLARSLNPRIVTLGEYEVSLNRVEFANRVKNSLRFYSAVFESLEPNLDRDSKERLRVERVLFGRRIMDLVRSDDDNNKPGTRFGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPGFISLAWNNVPLLTVSSWR 542          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.834e-31
Identity = 91/249 (36.55%), Postives = 125/249 (50.20%), Query Frame = -1
Query:   50 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAV---ENALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSW 787
            QALA RP G P  VRI+GI       +    L   G RL   A    +  EF P+ I   K+ A+   V P EAL VNF L+L+ + D++       +  L+M KSL+P V+TL E E+N N   F  RF   L YYTA+FES++  +  D  ER  +E+  L   I NL+A E +  + ER E    W+  +  + F   P S  +L  A I     +YS  + L +  D  L L WK  PL+  S+W
Sbjct:  300 QALAARPGGPPT-VRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAPFPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGE-ERAERYEPFGKWKARLTMAGFRPSPLS--SLVNATIRTLLQSYSDNYKLAE-RDGALYLGWKSRPLVVSSAW 543          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.989e-30
Identity = 88/250 (35.20%), Postives = 132/250 (52.80%), Query Frame = -1
Query:   50 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENA----LQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSW 787
            QALA RP G P +VRI+GI  P    +    L   G  L+  +    + LEF P+ +   ++      + P EAL VNF LQL+   D++ + V N     L+M K L+P V TL E E++ N T FL RF   ++YY+A+FES++ N+  D+ ER  VE+  L   I N++A E +  + ER E +  W+  +  + F   P S Y  S    LL    YS  +TL++  D  + L W+   L++ S+W
Sbjct:  327 QALAARPGGPP-RVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEALSVNFTLQLHHTPDES-VDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKD-RVERHELLGKWKSRLTMAGFRPYPLSSYVNSVIRKLL--ACYSDKYTLDEK-DGAMLLGWRSRKLISASAW 570          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.556e-30
Identity = 92/252 (36.51%), Postives = 128/252 (50.79%), Query Frame = -1
Query:   47 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVEN----ALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKR-ERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWK 787
            +AL  RP G P  VRI+GI  P    +    L   G RL + A    +  EF    +   ++      V   EAL VNF L L+ + D++ + VEN     L++ K L+PNVVTL E EAN N   FL RF   + +Y AVFES++  +  D  ER  VE+  L   + NL+A E  G +R ER E +  WR     + F+  P S Y  +  + LL   +YS  +TL +  D  L L WK  PL+T  +W+
Sbjct:  353 RALGARPGGPP-NVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGAALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDES-VTVENHRDRLLRLVKHLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIACE--GVEREERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLL--ESYSEKYTL-EERDGALYLGWKNQPLITSCAWR 597          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: SCL18_ARATH (Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.898e-29
Identity = 88/257 (34.24%), Postives = 134/257 (52.14%), Query Frame = -1
Query:   47 QALANR---PTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIP-------IRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWK 787
            QALA R   P+  P  +RI+G      G      L  TGDRL  FA SL L  +F  ++I        + ++R  +      E + VN +  L+ + +D+   + + L   KSLN  +VT+AE EAN     FL RF  A+ +Y A+F+SLE  +  +S ER  +E++  G  I +++A E +  +++R    E W   M+   F  +P   +ALSQA++LL  +  S  + L Q  +N L L W+  PL +VSSWK
Sbjct:  197 QALAERSSNPSSPPPSLRITGCGRDVTG------LNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIGHFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSLEATLPPNSRERLTLEQRWFGKEILDVVAAE-ETERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKLLLRLHYPSEGYNL-QFLNNSLFLGWQNRPLFSVSSWK 445          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.175e-28
Identity = 86/252 (34.13%), Postives = 127/252 (50.40%), Query Frame = -1
Query:   47 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVEN----ALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKR-ERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWK 787
            QA A RP G P ++RI+GI       +    L   G+RL + A   ++  EF  + + + +++  +  V P EAL VNF   L+ + D++ ++ EN     L+M KSL+P VVTL E E+N N   F  RF   + YY A+FES++  +  D  +R  VE+  L   + N++A E  GA R ER E +  WR     + F   P S    S  + LL   NYS  + L +  D  L L W    L+   +WK
Sbjct:  246 QAFAARPGGPP-RIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDES-VSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACE--GADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLL--RNYSDKYRL-EERDGALYLGWMHRDLVASCAWK 490          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.058e-27
Identity = 90/250 (36.00%), Postives = 136/250 (54.40%), Query Frame = -1
Query:   47 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIP-IRKLRASSFRVDP-NEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKR-ERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWK 787
            QALA RP G P   R++GI  P    S   SL   G +L +FA ++ +  EF+ +    +  L    F   P +E LVVN + +L+ LL  +  ++E  L   K++ P++VT+ E EAN N   FL RF  AL YY+++F+SLE + +  S +R   E   LG +I N++A E  G+ R ER E    WRI M+++ F+ I     A  QA +LL  Y     + + + +D  L + W+  PL+T S+WK
Sbjct:  304 QALALRPGGPP-SFRLTGIGPPQTENSD--SLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSG-SIEKLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSE-VYLGRQILNVVAAE--GSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRV-EENDGCLMIGWQTRPLITTSAWK 545          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.334e-26
Identity = 83/258 (32.17%), Postives = 134/258 (51.94%), Query Frame = -1
Query:   50 QALANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLN-SLLDDNRLAVENALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNY--NYSPLFTLNQSHDNL---------LTLSWKKVPLLTVSSW 787
            Q+LA+R    P  VRI+GI    L       L  TGDRL  FA +++L  EF P++  +  +R     V   E++ VN ++Q++ +L D    A+ + L + +S NP  + LAE EA  N      R  N+LKYY+A+F+++  N+ TDS  R +VE  + G  I N++A E    ++ER     +WR  +E   F  +  S   + Q+++LL  Y  +    F + +S ++          +TL W + PL T+S+W
Sbjct:  404 QSLASR-INPPHHVRITGIGESKL------ELNETGDRLHGFAEAMNLQFEFHPVVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACE-GSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGSDNEGFFNVERSDEDNGGEGGRGGGVTLRWSEQPLYTISAW 653          
BLAST of CN186577 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 87/245 (35.51%), Postives = 129/245 (52.65%), Query Frame = -1
Query:   47 LANRPTGKPVKVRISGIPAPALGKSPAASLLATGDRLREFAGSLSLNLEFEPILIPIRKLRASSFRVDPNEALVVNFMLQLNSLLDDNRLAVENALQMAKSLNPNVVTLAEYEANLNRTGFLARFKNALKYYTAVFESLEPNMTTDSDERFQVERQILGPRIANLLAPEKQGAKRERVEDIENWRIFMENSDFEGIPFSHYALSQAEILLWNYNYSPLFTLNQSHDNLLTLSWKKVPLLTVSSWK 781
            LA+RP G P  VR++G     LG S   +L ATG RL +FA  L L  EF P+   +  +      V  +EA+ V++   L   L D   +  N L + + L P VVT+ E + + N   FL RF  A+ YY+A+F+SL  +   +S+ER  VE+Q+L   I N+LA    G  R       NWR  ++   F G+  +  A +QA +LL  +  S  +TL +  + +L L WK + LLT S+W+
Sbjct:  577 LASRPGGPPY-VRLTG-----LGTS-METLEATGKRLSDFANKLGLPFEFFPVAEKVGNIDVEKLNVSKSEAVAVHW---LQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLS-NAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLA--VGGPSRSGEIKFHNWREKLQQCGFRGVSLAGNAATQASLLLGMFP-SEGYTLVED-NGILKLGWKDLCLLTASAWR 806          
The following BLAST results are available for this feature:
BLAST of CN186577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SCL4_ARATH2.239e-8259.51Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL7_ARATH4.521e-7555.78Scarecrow-like protein 7 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ6.834e-3136.55Chitin-inducible gibberellin-responsive protein 2 ... [more]
CIGR1_ORYSJ1.989e-3035.20Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL5_ARATH7.556e-3036.51Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
SCL18_ARATH4.898e-2934.24Scarecrow-like protein 18 OS=Arabidopsis thaliana ... [more]
PAT1_ARATH3.175e-2834.13Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
RGL2_ARATH2.058e-2736.00DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
SCL28_ARATH1.334e-2632.17Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SCR_PEA4.291e-2535.51Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186577 ID=CN186577; Name=CN186577; organism=Citrus sinensis; type=EST; length=787bp
TTTTTTTTTTTTTTAGACAGAAACCCACCATCATGATCAACATCCCTTTC
CATGAAGAAACGGTAAGAAGAGGCACCTTCTTCCATGACAAGGTTAACAA
GTTATCGTGAGACTGATTCAACGTGAACAGAGGACTGTAATTATAGTTCC
ATAACAAAATCTCAGCCTGACTAAGTGCATAATGGCTGAAGGGTATCCCT
TCAAAATCGGAATTCTCCATGAAAATGCGCCAATTCTCGATATCCTCGAC
ACGTTCTCTTTTGGCTCCCTGTTTCTCTGGTGCAAGCAAATTTGCAATTC
TTGGACCCAGAATTTGTCTTTCAACTTGGAATCTCTCATCTGAGTCCGTG
GTCATGTTCGGCTCCAGGGACTCAAACACGGCAGTGTAATACTTCAACGC
GTTCTTGAACCTGGCCAAAAACCCCGTCCGATTCAAATTTGCTTCGTACT
CTGCGAGAGTAACCACATTCGGGTTTAAGGATTTTGCCATCTGAAGAGCA
TTTTCCACAGCAAGCCGGTTGTCGTCTAGTAAGCTGTTCAACTGAAGCAT
GAAGTTCACAACCAACGCCTCGTTCGGGTCGACCCGAAAACTCGAGGCCC
GGAGTTTTCGAATGGGGATTAGAATGGGTTCGAACTCCAAGTTCAATGAG
AGAGATCCAGCGAATTCACGGAGACGATCACCAGTAGCGAGGAGCGAGGC
AGCCGGGGACTTGCCGAGAGCTGGAGCGGGTATGCCTGAGATCCGAACCT
TAACGGGCTTTCCAGTTGGTCGATTGGCTAATGCTTG
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