CN186572

Overview
NameCN186572
Unique NameCN186572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186572_ssr58 microsatellite CN186572_ssr58:58..75. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2698 contig Csv1_Contig2698:182..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.379e-68
Identity = 118/156 (75.64%), Postives = 134/156 (85.90%), Query Frame = 1
Query:  175 FPLTARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            FP TAR IS +  P  N+  +LGFG RP PDPA++  SAIAQGPDDDVP+PGQQF+QFGAGCFWG ELA+QRVPGVTKTEVGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDPT LNRQGNDVGT+YRSGIYFYT EQ
Sbjct:   40 FPKTARSISVYKSPMNNLFTRLGFGSRPQPDPAAS--SAIAQGPDDDVPSPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQ 193          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.064e-66
Identity = 118/157 (75.16%), Postives = 133/157 (84.71%), Query Frame = 1
Query:  175 FPLTAR-PISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            FP T+R PIS +  P  N+ N+LGFG RP    A   ++AIAQGPDDDVP+ GQQF+QFGAGCFWGVELA+QRVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD+FW RHDPT LNRQG DVGTQYRSGIY+YT EQ
Sbjct:   39 FPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQ-ADPSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQ 194          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.892e-65
Identity = 113/141 (80.14%), Postives = 127/141 (90.07%), Query Frame = 1
Query:  220 MNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            M+ L +LG G R +P  AS + S+IAQGPDDD+PAPGQQF+QFGAGCFWGVELAFQRVPGV+KTEVGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD FW RHDPT LNRQGNDVGTQYRSGIYFYTPEQ
Sbjct:   56 MSWLGRLGXGTR-TPADASMDQSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQ 195          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 9.329e-43
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 1
Query:  271 ASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            +ST N+       D    PG + +QF +GCFWG EL FQRV GV KTEVGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL +FW+RHDPT LNRQG DVGTQYRSGIY+Y  EQ
Sbjct:    3 SSTTNNPALDLDSDTPENPGHELAQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQ 126          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.218e-42
Identity = 80/124 (64.52%), Postives = 95/124 (76.61%), Query Frame = 1
Query:  274 STENSAIAQGPDDDVP-APGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            ST N A+   PD D P  PG +F+QF AGCFWGVELAFQRV GV KTEVGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDPT LNRQGNDVG QYRSGIY+Y   Q
Sbjct:   10 STTNPAL--DPDLDSPDQPGLEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQ 131          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.034e-33
Identity = 62/99 (62.63%), Postives = 77/99 (77.78%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            F AGCFW VEL FQRV GVTKT VGY+ G + NP+Y  VCSG T   E V ++YDP++ +++ LL +FW++HDPT LNRQGNDVGTQYRSGIY++  EQ
Sbjct:    6 FAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA1_SYNY3 (Peptide methionine sulfoxide reductase msrA 1 OS=Synechocystis sp. (strain PCC 6803) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.326e-32
Identity = 68/137 (49.64%), Postives = 88/137 (64.23%), Query Frame = 1
Query:  259 SPDPASTENSAIAQGPD------DDVPAP---GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            +P+ A    SA    PD      + + AP   G + + FG GCFWG E  F ++PGV  T VGY+ GY  NP+Y++VC+G T HNEVV V +DP++ S+D LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q
Sbjct:   15 APNEALPGRSATMPVPDKHFVNGNPLKAPFPQGMETALFGLGCFWGAERKFWQIPGVYSTAVGYAAGYTPNPTYQEVCTGMTGHNEVVLVAFDPQQVSYDQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYTYSEAQ 151          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  319 PAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            P    + + FGAGCFWGVE AF+RVPGV +T VG+  G + NP+Y +VC+G T H EVV+V YDP   S+  LLD FW  HDPT  NRQG D+GTQYRS I+ +TPEQ
Sbjct:    3 PEKSLERATFGAGCFWGVEEAFRRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFWDAHDPTTPNRQGPDIGTQYRSVIFVHTPEQ 110          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALAI (Peptide methionine sulfoxide reductase msrA OS=Salinispora arenicola (strain CNS-205) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  328 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            G Q + FG GCFWG E  F  +PGV  T VGY+ GY  NPSYE+VCSG T H EVV+V+YDP + +++ LL +FW  HDPT   RQGNDVGTQYRS IY  T EQ
Sbjct:   44 GTQVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYEEVCSGRTGHAEVVQVRYDPTKIAYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYTTTEEQ 148          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.264e-31
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            FGAGCFWGVE AF++V GV  T VGY  G+L NP+YEDVC+G T H EVV V +DP    +  LLD+FW+ HDPT LNRQG DVG QYRS I++++ EQ
Sbjct:   12 FGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQ 110          
The following BLAST results are available for this feature:
BLAST of CN186572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_BRANA8.379e-6875.64Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH2.064e-6675.16Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_LACSA3.892e-6580.14Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_FRAAN9.329e-4362.90Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_SOLLC1.218e-4264.52Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_DICDI1.034e-3362.63Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA1_SYNY33.326e-3249.64Peptide methionine sulfoxide reductase msrA 1 OS=S... [more]
MSRA_METMJ4.344e-3258.33Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_SALAI5.673e-3260.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METTH1.264e-3161.62Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186572 ID=CN186572; Name=CN186572; organism=Citrus sinensis; type=EST; length=644bp
AGTAACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTACCCAAGTGTCT
TTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAAATCAC
CACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAAAACCCTCTTTCT
CTCTCTAAACCCAACCCGACCCATTTCCCTCTCACTGCCCGACCTATTTC
CACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTTCGGCT
TCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCGCTCAG
GGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTTCCCAGTTCGG
CGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCCAGGTG
TCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGC
TACGAGGACGTGTGTAGTGGGACTACCAATCATAATGAAGTTGTTAGGGT
TCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTT
GGGCTCGCCATGATCCTACCATGCTTAATCGGCAGGGTAATGATGTTGGA
ACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGA
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