CN186568

Overview
NameCN186568
Unique NameCN186568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1746 contig Csv1_Contig1746:121..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.077e-74
Identity = 137/200 (68.50%), Postives = 152/200 (76.00%), Query Frame = 3 
Query:   51 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRD 620
            MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+  IDLK+PPRPPGYAFVEF++ARDAEDAI GRDGYDFDGHRLRVELA                                     E+RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT Y+DMK+A+KKLDD+EFRNAFS  YVRVREYD R+D
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKD 200
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 93/190 (48.95%), Postives = 122/190 (64.21%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------------YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVRE 602
            +YVGNLPGD+RE+EVED+F+KYG I ++D+K   R P +AFVEFE+ RDAEDA+R RDGY+FDG R+RVE                                           YRV+V GLP + SWQDLKDHMR AGDVC++ V RDG   TG+V++T Y+D+K+A++KLDD++FR +    AY+RVRE
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRE 196
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 92/179 (51.40%), Postives = 118/179 (65.92%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR ++VED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 9.968e-44
Identity = 91/179 (50.84%), Postives = 118/179 (65.92%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
[Close]
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.469e-42
Identity = 91/189 (48.15%), Postives = 117/189 (61.90%), Query Frame = 3 
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL-------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 599
            +YVGNLP DIR ++VED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+  RDGYD+DG+RLRVE                                          EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 202
The following BLAST results are available for this feature:
BLAST of CN186568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SFRS1_ARATH7.077e-7468.50Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
RSP3_CAEEL2.008e-4448.95Probable splicing factor, arginine/serine-rich 3 O... [more]
SFR1B_DANRE7.632e-4451.40Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK9.968e-4450.84Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_PONAB3.206e-4249.72Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG3.206e-4249.72Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE3.206e-4249.72Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN3.206e-4249.72Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]
SFRS1_BOVIN3.206e-4249.72Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SFR1A_DANRE5.469e-4248.15Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186568 ID=CN186568; Name=CN186568; organism=Citrus sinensis; type=EST; length=706bp
ATTCTTAGTCTTTGTGCACAACTATCGTTTAATCATCATTACAGGAAAAA
ATGAGCAGCCGTGCAAGCAGAACTCTCTATGTTGGGAACCTGCCTGGTGA
TATTCGGGAGAGAGAAGTGGAAGATCTGTTTTACAAGTATGGACCTATAG
CCCACATTGACCTGAAGATCCCGCCAAGGCCTCCTGGTTATGCATTTGTT
GAGTTTGAAGAGGCTCGTGATGCTGAGGATGCAATTCGTGGTCGCGATGG
CTATGATTTTGATGGGCATCGGTTACGGGTGGAACTTGCGCATGGTGGGC
GGGGCCGTTCATCATCTGATCGTCATAGTAGTCACAGCAGTGGCCGAGGA
CGTGGAGTATCCAGGCGATCCGAATATCGTGTGTTAGTCACTGGATTACC
CTCTTCTGCTTCATGGCAAGACCTTAAGGATCACATGCGTCGAGCAGGAG
ATGTTTGTTTCTCACAAGTTTTTCGTGATGGCAGTGGCACAACTGGCATT
GTGGACTACACAAACTATGATGATATGAAGCATGCAATCAAAAAACTTGA
TGACTCTGAGTTTAGGAATGCATTTTCTCGGGCTTATGTTCGGGTGAGGG
AGTATGATCATAGACGTGATGGATCCCAGAGTCCTAGTCGTGGCCGATCT
TATTCAAGAGGGCGGAGTGAGAGCCGAAGCCGCAGTCGCAGTCGTGGCCG
AAGTTA
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