CN186564

Overview
NameCN186564
Unique NameCN186564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2552 contig Csv1_Contig2552:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186564 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.880e-28
Identity = 69/152 (45.39%), Postives = 100/152 (65.79%), Query Frame = 3
Query:  105 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 560
            G LKVT+ +G  L IRD  SSDPYVVL LG Q  +T V+NS LNPVWN+E  LS+ E  G + L+V+D D F ADD MG+A +++QP+I++A +        G+  + K +   +N L  +S I  ++G+V Q V ++L  VESGE+EL+++
Sbjct:  180 GLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSA-MAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEME 330          
BLAST of CN186564 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.129e-27
Identity = 68/152 (44.74%), Postives = 98/152 (64.47%), Query Frame = 3
Query:  105 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLRKIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 560
            G LKVT+ +G  + IRD  SSDPYVVL LG Q A++ V+ S LNPVWNEE  LS+    G + L+VFD D F ADD MG+A +++QP+I++A +        G+  + K +   +N L  +S I   +G+V Q V ++L  VESGE+EL+++
Sbjct:  181 GLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSA-MAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELEME 331          
BLAST of CN186564 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.474e-27
Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 3
Query:  105 GQLKVTVVQGKRLVIRDFKSSDPYVVLKLGNQMAKTKVINSCLNPVWNEEHSLSLTEPVGVLSLEVFDKDRFKADDKMGKAYLNLQPIISAARLRHLVHVSSGETPLR--KIIPDSENCLARESSIICINGEVVQNVWLRLCEVESGEIELKVK 560
            G +KV VV+G  L +RD  +SDPYV+L LG Q  KT+VI + LNPVWNE   LS+ EP+  L + V+DKD F  DD MG+A +++QP++SAA+       SS + P++    +   EN L  +  I+  +G+V Q++ LRL  VE G +E++++
Sbjct:  229 GLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAK---AYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLE 379          
The following BLAST results are available for this feature:
BLAST of CN186564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD13_ARATH3.880e-2845.39Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH1.129e-2744.74ADP-ribosylation factor GTPase-activating protein ... [more]
AGD11_ARATH1.474e-2742.86Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186564 ID=CN186564; Name=CN186564; organism=Citrus sinensis; type=EST; length=650bp
CATTGCTTTTTCTCCTTATTCTCCAAATCCACACGGCAGTCCCAAGTGAG
TGCCAAGTTCTTAAGGCGATCCATCTTAGAAACTGCATTATGAGGCAGCC
ATTTGGACAGCTAAAAGTGACTGTGGTGCAAGGGAAAAGGTTGGTGATCC
GAGATTTCAAGAGCAGTGATCCTTATGTTGTACTCAAGTTGGGCAATCAG
ATGGCAAAGACTAAGGTTATAAACAGTTGCCTTAATCCCGTTTGGAATGA
GGAGCATAGTTTGTCTCTCACAGAGCCAGTTGGAGTTCTGAGTTTGGAAG
TGTTTGATAAAGACCGATTCAAGGCAGATGACAAGATGGGAAAGGCCTAC
CTCAACCTTCAACCAATAATCTCTGCTGCAAGGTTGAGGCATCTTGTGCA
TGTCTCATCTGGAGAGACACCATTAAGGAAAATTATTCCAGATTCAGAAA
ACTGCCTAGCCAGGGAAAGCTCAATTATTTGTATAAATGGTGAAGTGGTG
CAAAATGTTTGGTTAAGGCTCTGTGAAGTTGAGTCAGGGGAGATAGAACT
AAAAGTCAAGATAGTCGATGCTCCTTCGAGGTAGGATAGTGCAGTGCCTC
AAGTAGTGTTAAGTGTACTGTCTTGTTTGTAGTCTAGTCTACTTGCTTCA
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