CN186554

Overview
NameCN186554
Unique NameCN186554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9917 contig Csv1_Contig9917:298..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186554 vs. ExPASy Swiss-Prot
Match: AGD14_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.497e-28
Identity = 81/209 (38.76%), Postives = 102/209 (48.80%), Query Frame = -2 
Query:  155 PWPGNLHNGEAPAIATNMQSWNAFDDFTSHLPSEGFKPNSEPHVDAYMPSP--TPDQYLAIVSQHETNDDGNPRVASHDGPPNMTVPSQADMGPSYNPSMFPLMMRTHATEHKSTNPFDFPCDSDLEQNNMFLDMSSLQAALPNSELPSPFLGGATQSWFPQNPVSPFV--QAAAQGGLAYMSGQSPSAQLANIPTQEPVASVGGNPFA 769
            PW  +L N     +  N Q WNAF D     P +  + N    VD    S   T  Q+L      E ++DG        G      P    M PSY+   +      H  E KS NPFD P DS+ + N+MFLDMSSLQ ALP+ + P  FL G +Q W   + V  ++   A AQGGLAYM+GQ+ +    N   Q PVA  GGNPFA
Sbjct:  452 PWQEDLSN-VLKDVVDNPQPWNAFPDSIEANPLDSSR-NIHQQVDGASTSSYNTDHQHLESQVLEELSNDGTQTTRIPAGSSAFGFPGNIGMAPSYSEEAWQ-----HVNEQKSANPFDLPYDSEFDSNDMFLDMSSLQGALPDIQTPQAFLNGVSQPWLAADSVPSYLPAPAVAQGGLAYMAGQAST----NSAAQGPVAFTGGNPFA 649
The following BLAST results are available for this feature:
BLAST of CN186554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD14_ARATH2.497e-2838.76Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186554 ID=CN186554; Name=CN186554; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTATTTTGGCAAGAATACAAAAATAATAATATACATTAC
TTTTTTCATTCTGGGATACAGAAAGACACTACAATCCTTCACTAGGAAAC
TCCAACTACCTGACAGAGAAGTACGAAAACAGCATTCCTGCCAGGAAAAT
ATTATGCGAAAGGATTTCCTCCAACTGAAGCAACAGGTTCTTGTGTAGGA
ATATTCGCTAATTGTGCTGATGGTGATTGTCCTGACATGTACGCTAAGCC
ACCTTGGGCTGCTGCCTGGACAAAAGGACTCACTGGATTTTGAGGAAACC
ATGATTGAGTTGCACCACCAAGGAAGGGGGATGGCAACTCTGAATTTGGA
AGTGCAGCTTGCAGAGAGCTCATGTCCAAGAACATATTATTCTGCTCCAA
ATCAGAATCACAAGGAAAATCAAATGGATTTGTTGACTTATGTTCAGTTG
CATGTGTCCGCATCATTAGAGGAAACATTGATGGGTTATAAGATGGGCCC
ATGTCAGCCTGAGATGGTACCGTCATGTTGGGGGGTCCATCATGGGAGGC
AACTCTCGGATTTCCATCATCATTAGTCTCATGCTGGGAAACTATTGCCA
AATACTGATCTGGAGTTGGTGAAGGCATGTACGCATCTACATGGGGTTCA
CTATTTGGCTTAAAACCCTCCGAGGGAAGATGGCTGGTGAAATCATCAAA
AGCATTCCATGACTGCATGTTTGTTGCAATTGCAGGGGCTTCACCATTGT
GCAAATTTCCAGGCCATGGATCAGATGCTGCAGATACTACCTGCGCGCTA
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