CN186551

Overview
NameCN186551
Unique NameCN186551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8410 contig Csv1_Contig8410:117..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186551 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.150e-76
Identity = 140/178 (78.65%), Postives = 149/178 (83.71%), Query Frame = 3
Query:  105 PSRAHSRSILTVRAGATDXXXXXXXXXXN----EPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERR 626
            P ++ S +  TVRA  TD          N    E RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R
Sbjct:   42 PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQR 218          
BLAST of CN186551 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.586e-31
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  195 PRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTY---------------QPNKRKESKYVSKRYERRRD----GPPAER 623
            P+ETI+L GCD+ HWL+V+E P    PTR+++I++Y+ TLA ++GS +EA+  +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG+ +++G+ +P   P Y               + N R  +   S+ +ERRR+    GPP +R
Sbjct:   86 PKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYD-PKYHEEWIRNNARANERNRRNDRPRNNDRSRNFERRRENMAGGPPPQR 245          
The following BLAST results are available for this feature:
BLAST of CN186551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA6.150e-7678.65DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH1.586e-3142.59Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186551 ID=CN186551; Name=CN186551; organism=Citrus sinensis; type=EST; length=633bp
CGTCGACTCTGTACGCACCATCAATCCTCGCATCCAAACCCCTCCTCTCA
TCTCGCCCTCAACTCACTCTGGGCCTCCGAGTCGGCTCACCGACTCTCCG
CCTCCCATCTCGCGCTCACTCGCGCTCGATCTTGACCGTCAGAGCTGGGG
CAACGGACAGCGAGTACTCGTCCAAGAGAAGCAGCAGCAATGAGCCGAGG
GAGACGATTATGTTACCGGGATGTGACTACAACCACTGGCTTATTGTCAT
GGAGTTCCCCAAGGACCCTGCTCCCACGAGAGAGCAGATGATTGAAACTT
ATCTCAATACTCTTGCCACTGTTCTTGGAAGCATGGAAGAAGCAAAGAAG
AATATGTATGCTTTTAGCACCACTACTTACACTGGATTCCAATGCACAGT
ATCCGAAGAAACCTCAGAGAAATTCAAAGGCCTGCCTGGTGTTCTTTGGG
TGTTGCCCGATTCATACATAGATGTCAAAAATAAAGATTATGGAGGTGAT
AAATATGTCAATGGAGAGATCATTCCCTGCACATATCCCACTTATCAGCC
AAACAAACGAAAAGAATCAAAATATGTGAGCAAAAGATATGAGAGACGAA
GAGATGGCCCTCCTGCTGAAAGAAGAACGAGAC
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