CN186550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 1.467e-86 Identity = 154/188 (81.91%), Postives = 165/188 (87.77%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 HMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT YEGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERA V YER+KQL KLRVKAEK AEE+LG QL+I+AP+KY Sbjct: 19 HMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 2.119e-85 Identity = 149/188 (79.26%), Postives = 165/188 (87.77%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 HMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT +EGVP PYDK KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERAQ YER+KQL+KLR KAEK AEE+LG QL+++AP+KY Sbjct: 19 HMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 8.052e-85 Identity = 151/188 (80.32%), Postives = 164/188 (87.23%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 HMLGRLAS AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT +EG+P PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+QV YER+KQL KLR KAEK AEERLG QL+++AP+KY Sbjct: 19 HMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1) HSP 1 Score: 310.071 bits (793), Expect = 8.903e-84 Identity = 149/188 (79.26%), Postives = 162/188 (86.17%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 HM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT +EGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+Q YER+KQL KLR KAEK AEE+LG QL+++A IKY Sbjct: 19 HMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1) HSP 1 Score: 305.449 bits (781), Expect = 2.193e-82 Identity = 147/188 (78.19%), Postives = 166/188 (88.30%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 HMLGRLAS++AKELLNGQKVV+VR EEICISGGLVRQKMKY+RFLRKRMNTKPSHGPIH AP+KI WRT+RGMIPHKT YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+LSSEVGWNYYDTIKELEKKRKER+QV YER+KQL KLRVKAE+ A+E+LG QL+I+AP+KY Sbjct: 19 HMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1) HSP 1 Score: 297.36 bits (760), Expect = 5.972e-80 Identity = 143/188 (76.06%), Postives = 166/188 (88.30%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 HMLGRLAS+LAKELL+GQ+VVVVRCEEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKT A+EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+++DTI ELE+KRK +AQV+YERRKQLAKLR KA + AE++L P++E++A +KY Sbjct: 19 HMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 6.649e-55 Identity = 105/175 (60.00%), Postives = 127/175 (72.57%), Query Frame = -3 Query: 255 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEER 779 H+LGRLA+ LAKELLNGQ+VV VR EEI ISG L R K+K+ FL+KRMNT P GP HFR+PA+ILWRTIRGMIPHKT A+EGVP PYDK KRMVIP AL+VLRL+ G K+C+LGRL++EVGW + D + LE+KRK ++ Y R+K L LR KA A + Sbjct: 13 HLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3) HSP 1 Score: 214.157 bits (544), Expect = 6.649e-55 Identity = 100/183 (54.64%), Postives = 134/183 (73.22%), Query Frame = -3 Query: 231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779 H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E+++G E++ Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3) HSP 1 Score: 213.001 bits (541), Expect = 1.481e-54 Identity = 99/183 (54.10%), Postives = 133/183 (72.68%), Query Frame = -3 Query: 231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779 H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E+++ E++ Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 212.616 bits (540), Expect = 1.934e-54 Identity = 99/183 (54.10%), Postives = 133/183 (72.68%), Query Frame = -3 Query: 231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779 H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E+++ E++ Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196 The following BLAST results are available for this feature:
BLAST of CN186550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186550 ID=CN186550; Name=CN186550; organism=Citrus sinensis; type=EST; length=781bpback to top |