CN186550

Overview
NameCN186550
Unique NameCN186550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186550_ssr203 microsatellite CN186550_ssr203:203..214. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186550_ssr711 microsatellite CN186550_ssr711:711..722. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4547 contig Csv1_Contig4547:165..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.467e-86
Identity = 154/188 (81.91%), Postives = 165/188 (87.77%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            HMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            YEGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERA V YER+KQL KLRVKAEK AEE+LG QL+I+AP+KY
Sbjct:   19 HMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.119e-85
Identity = 149/188 (79.26%), Postives = 165/188 (87.77%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            HMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERAQ  YER+KQL+KLR KAEK AEE+LG QL+++AP+KY
Sbjct:   19 HMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.052e-85
Identity = 151/188 (80.32%), Postives = 164/188 (87.23%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            HMLGRLAS  AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EG+P PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+QV YER+KQL KLR KAEK AEERLG QL+++AP+KY
Sbjct:   19 HMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 8.903e-84
Identity = 149/188 (79.26%), Postives = 162/188 (86.17%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            HM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKT            +EGVP PYDK KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+Q  YER+KQL KLR KAEK AEE+LG QL+++A IKY
Sbjct:   19 HMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.193e-82
Identity = 147/188 (78.19%), Postives = 166/188 (88.30%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            HMLGRLAS++AKELLNGQKVV+VR EEICISGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KI WRT+RGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHKYCLLG+LSSEVGWNYYDTIKELEKKRKER+QV YER+KQL KLRVKAE+ A+E+LG QL+I+AP+KY
Sbjct:   19 HMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 5.972e-80
Identity = 143/188 (76.06%), Postives = 166/188 (88.30%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            HMLGRLAS+LAKELL+GQ+VVVVRCEEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKT           A+EGVP PYD+ KRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+++DTI ELE+KRK +AQV+YERRKQLAKLR KA + AE++L P++E++A +KY
Sbjct:   19 HMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.649e-55
Identity = 105/175 (60.00%), Postives = 127/175 (72.57%), Query Frame = -3
Query:  255 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEER 779
            H+LGRLA+ LAKELLNGQ+VV VR EEI ISG L R K+K+  FL+KRMNT P  GP HFR+PA+ILWRTIRGMIPHKT           A+EGVP PYDK KRMVIP AL+VLRL+ G K+C+LGRL++EVGW + D +  LE+KRK ++   Y R+K L  LR KA  A   +
Sbjct:   13 HLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASK 187          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 6.649e-55
Identity = 100/183 (54.64%), Postives = 134/183 (73.22%), Query Frame = -3
Query:  231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779
            H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++G   E++
Sbjct:   14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.481e-54
Identity = 99/183 (54.10%), Postives = 133/183 (72.68%), Query Frame = -3
Query:  231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779
            H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:   14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.934e-54
Identity = 99/183 (54.10%), Postives = 133/183 (72.68%), Query Frame = -3
Query:  231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779
            H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:   14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196          
The following BLAST results are available for this feature:
BLAST of CN186550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
R13A4_ARATH1.467e-8681.9160S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH2.119e-8579.2660S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A3_ARATH8.052e-8580.3260S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A2_ARATH8.903e-8479.2660S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_LUPLU2.193e-8278.1960S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA5.972e-8076.0660S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CYAPA6.649e-5560.0060S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN6.649e-5554.6460S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_PONAB1.481e-5454.1060S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_HUMAN1.934e-5454.1060S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186550 ID=CN186550; Name=CN186550; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTGTGACGAAATTGAGCAAATTGATAACCAAAATA
ACCCTTTTCAACAAGTATGTTGCATACAGCATAACATCTACTTCAAAACT
ACCACAGTTAAACTATAATCCATCAATATCAAAATGGAAGACAAAATATA
ATGGGAACAAACTCTTCTCAGATGTAACATTTGGAAAACAAACTCTTTAC
GAATCATCATCATCAATACTTGATGGGAGCAATGATTTCTAGCTGGGGAC
CAAGCCTCTCCTCGGCAGCCTTCTCAGCTTTGACCCTCAATTTAGCCAAC
TGCTTCCTCCTCTCATAAGCTACCTGGGCCCTCTCCTTTCTCTTCTTCTC
GAGCTCCTTAATGGTATCATAATAGTTCCATCCTACTTCAGATGAAAGCC
TGCCCAACAAGCAGTACTTGTGTCCTTTTTGAAGCCTCAAGACCTTGAGA
GCATCAGGAATGACCATCCTCTTTGTCTTGTCATATGGAGCAGGAACTCC
TTCATAAGCCTTCAAACGAGCAAGGGCTGCAGCTCCACGCTTAGTTTTGT
GGGGAATCATCCCACGGATGGTACGCCAAAGGATCTTAGCGGGAGCTCGA
AAATGGATGGGACCATGAGAAGGCTTAGTGTTCATCCTCTTTCTCAAGAA
CCTCATGTACTTCATCTTCTGCCTAACAAGCCCACCTGAGATACAAATCT
CCTCGCACCGGACGACGACGACCTTCTGGCCGTTCAAGAGCTCCTTGGCC
AAAACGGAGGCAAGACGGCCGAGCATGTGGT
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