CN186546

Overview
NameCN186546
Unique NameCN186546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13853 contig Csv1_Contig13853:397..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.126e-51
Identity = 98/154 (63.64%), Postives = 124/154 (80.52%), Query Frame = -2
Query:  182 MSTVTLSAPCMVKAAPRNQLSRNLIKSPS---SLGSVKGISKTFGLKCSPNFQASM--AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 628
            M+TV +S+  M KA  R+Q +  LI + S   S+GS K +S++FGLKCS N   +   AVYK+KL+GP+G+E EFE Q+DQYILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDGSFL+D+ +E GY+LTC++YP SDCVI +HKE EL
Sbjct:    1 MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.409e-47
Identity = 95/151 (62.91%), Postives = 111/151 (73.51%), Query Frame = -2
Query:  182 MSTVTLSAPCMVKAAPRN-QLSRNLIKSPSSLGSVKGISKTFGLKCSPNFQAS-MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 628
            MST T +  C +    R  Q S+  +KSPSSL     ++K   LK S     S MAVYK+KL+GP GEEHEF+A +D YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFLDD Q E GY+LTC+SYP SDCVI +HKE +L
Sbjct:    1 MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 72/96 (75.00%), Postives = 86/96 (89.58%), Query Frame = -2
Query:  182 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 469
            AVYK+KLIGP GEE+EFE Q+DQ+ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS+GSFL+D+  E G++LTC++YP SDCVI +HKE EL
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.198e-38
Identity = 72/96 (75.00%), Postives = 85/96 (88.54%), Query Frame = -2
Query:  182 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 469
            AVYK+KLIGP+G+E+EF+  +DQYILDAAEEAGVDLPYSCRAGACSTCAGK+  G VDQSDGSFL+D+  E GY+LTC++YP SD VI +HKEEEL
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 75/123 (60.98%), Postives = 96/123 (78.05%), Query Frame = -2
Query:  182 SSLGSVKGISKTFGLKCSPNFQASMA--VYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 544
            S  G  +  ++  G + S  F AS A  ++K+KL+GP+G EHEFEA +D YIL+AAE AGV+LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM  GYLLTCISYP +DCVI +HKEE+L
Sbjct:   32 SFAGHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.122e-36
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = -2
Query:  182 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA YK+ LI    G     E  +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 76/126 (60.32%), Postives = 96/126 (76.19%), Query Frame = -2
Query:  182 PSSLGSVKGISKTF-GLKCS---PNFQASMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 547
            P S+ + K  S  F GLK S    +   +MA YK+KL+ P+G + EFE   D YILD AEE G+DLPYSCRAG+CS+CAGK+V G VDQSDGSFLDD Q+EAG++LTC++YPTSD VI++HKEE+L
Sbjct:   23 PMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 70/97 (72.16%), Postives = 85/97 (87.63%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA Y +KLI P+GE +  E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA Y +KLI P+GE    E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGES-SIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.264e-36
Identity = 82/154 (53.25%), Postives = 106/154 (68.83%), Query Frame = -2
Query:  182 MSTVTLSAPCMVKAAPRNQLSRNLIKSPSSLGSVK--GISKTFGLKCSP---NFQASMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 628
            M++  LS+  +  +  R Q      ++P SL S+        FGLK S        +MA YK+K I P GE+ E E +ED Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD QM  GY+LTC++YPTSD VI++HKEE +
Sbjct:    1 MASTALSSAIVSTSFLRRQ------QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
The following BLAST results are available for this feature:
BLAST of CN186546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH6.126e-5163.64Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE2.409e-4762.91Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_RAPSA3.154e-3975.00Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_RAPSA1.198e-3875.00Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE2.044e-3860.98Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_MASLA1.122e-3673.47Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_PEA1.913e-3660.32Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER_SYNY42.499e-3672.16Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY33.264e-3672.16Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER1_ARATH3.264e-3653.25Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186546 ID=CN186546; Name=CN186546; organism=Citrus sinensis; type=EST; length=686bp
CTTTTTTTCCCAAATGCCAGTAATAGTATAACCAAATGAAAATTTAAAGA
TCCCTTTGCACAAGACAACACACTGAAATCTAAAAAATATTGTACGTTCA
TGAGAAACCTTATCGGCATACTCAGGCACTTGATCACAGTTCATACTTGA
AAAACCCTAAATCAACCGACAGTACTCAGCAAAGCTCTTCTTCCTTGTGA
GACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGATA
ACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTCAA
CTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGCGG
CAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATGTA
CTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCGTTAGGTCCAATCA
GCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATTTC
AGGCCAAAGGTCTTGGAGATGCCCTTAACAGACCCAAGTGAGGATGGGCT
CTTGATTAAGTTCCTTGATAGTTGATTTCTGGGTGCAGCTTTAACCATGC
ACGGGGCACTAAGTGTCACAGTCGACATCTTTACCCAGAAAAGCAAGAGA
TCGAGCGGCGGAGCGCGCGAGGTGGCGAGTGGGCCT
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